PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697240.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 727aa MW: 79464.4 Da PI: 6.9373

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697240.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.4	3.1e-24	149	250	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + XP_020697240.1 149 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyrQ--QRPSQELIAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--GG 239 99**************************9743..345679********************************************4..37 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ XP_020697240.1 240 NGELRLGIRRA 250 8889**997 PP
2	Auxin_resp	112.3	4.7e-37	274	354	2	82
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+a+ tk++F++ YnPr+ +seF+++++k++k+++ ++svG+Rfkm+fe+ed++err++G++++vsdldpv+Wp+SkWr+L XP_020697240.1 274 ANAVLTKKMFQINYNPRVNQSEFIIPYWKFRKSCSYSISVGTRFKMHFESEDAAERRCTGLITAVSDLDPVQWPGSKWRCL 354 68899***************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MGIDLNTIEE EEEDDPSELR PLTPSPQAGG VGSVCLELWH ACAGPRISLP KKGSLVVYLP 60 QGHLEHLAGG QHAGGGGMLL RHDVPPHVFC RVVEVQLRAE AATDEVYAQL SVIAESEGFD 120 GQIHGVAEGE GEEVDEMDAG DQSPIPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY 180 RQQRPSQELI AKDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGGN 240 GELRLGIRRA SQLKGNISGI HNLNVGVGAL ASLANAVLTK KMFQINYNPR VNQSEFIIPY 300 WKFRKSCSYS ISVGTRFKMH FESEDAAERR CTGLITAVSD LDPVQWPGSK WRCLVVRWDE 360 DDVDNSLHNR VSPWELEPTG SVSCPSSLLV SGSKRTRISI PSLGGSGYQS LRESARFQEV 420 LQGQEIFGFK SPYNGADATL PQLSEMRSHH LPEMRRCIAN PNSCLLAGSG GNTRVPPGNS 480 DFYYQGTGFG ESVRFHKVLQ GQEIVPVLPS FRGMAIESLR ENDGSKLFES YGTGRCSAAP 540 LQGYCTFIQP CTPTAQVSSP SSVLMFQHAA SQLPCTHSLY DANEKEKADN SNLSGPFSSA 600 DADHVQQTSS TTRVQPQASF ANAFNQGNGF TKEQCENLSM YKAPIHKNSQ SILHGNGSSC 660 RLFGFPLTEK IPVTNVVSSS FNESTLLEAS IKSSFSIQRP QMPSKNTGHG CTRAGLLISR 720 SLLDMPI

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MGIDLNTIEE EEEDDPSELR PLTPSPQAGG VGSVCLELWH ACAGPRISLP KKGSLVVYLP  60
QGHLEHLAGG QHAGGGGMLL RHDVPPHVFC RVVEVQLRAE AATDEVYAQL SVIAESEGFD  120
GQIHGVAEGE GEEVDEMDAG DQSPIPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY  180
RQQRPSQELI AKDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGGN  240
GELRLGIRRA SQLKGNISGI HNLNVGVGAL ASLANAVLTK KMFQINYNPR VNQSEFIIPY  300
WKFRKSCSYS ISVGTRFKMH FESEDAAERR CTGLITAVSD LDPVQWPGSK WRCLVVRWDE  360
DDVDNSLHNR VSPWELEPTG SVSCPSSLLV SGSKRTRISI PSLGGSGYQS LRESARFQEV  420
LQGQEIFGFK SPYNGADATL PQLSEMRSHH LPEMRRCIAN PNSCLLAGSG GNTRVPPGNS  480
DFYYQGTGFG ESVRFHKVLQ GQEIVPVLPS FRGMAIESLR ENDGSKLFES YGTGRCSAAP  540
LQGYCTFIQP CTPTAQVSSP SSVLMFQHAA SQLPCTHSLY DANEKEKADN SNLSGPFSSA  600
DADHVQQTSS TTRVQPQASF ANAFNQGNGF TKEQCENLSM YKAPIHKNSQ SILHGNGSSC  660
RLFGFPLTEK IPVTNVVSSS FNESTLLEAS IKSSFSIQRP QMPSKNTGHG CTRAGLLISR  720
SLLDMPI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-166	ARF family protein