PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697239.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 734aa MW: 80262.2 Da PI: 6.8807

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697239.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.4	3.1e-24	149	250	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + XP_020697239.1 149 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyrQ--QRPSQELIAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--GG 239 99**************************9743..345679********************************************4..37 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ XP_020697239.1 240 NGELRLGIRRA 250 8889**997 PP
2	Auxin_resp	112.3	4.7e-37	274	354	2	82
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+a+ tk++F++ YnPr+ +seF+++++k++k+++ ++svG+Rfkm+fe+ed++err++G++++vsdldpv+Wp+SkWr+L XP_020697239.1 274 ANAVLTKKMFQINYNPRVNQSEFIIPYWKFRKSCSYSISVGTRFKMHFESEDAAERRCTGLITAVSDLDPVQWPGSKWRCL 354 68899***************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence
MGIDLNTIEE EEEDDPSELR PLTPSPQAGG VGSVCLELWH ACAGPRISLP KKGSLVVYLP 60 QGHLEHLAGG QHAGGGGMLL RHDVPPHVFC RVVEVQLRAE AATDEVYAQL SVIAESEGFD 120 GQIHGVAEGE GEEVDEMDAG DQSPIPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY 180 RQQRPSQELI AKDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGGN 240 GELRLGIRRA SQLKGNISGI HNLNVGVGAL ASLANAVLTK KMFQINYNPR VNQSEFIIPY 300 WKFRKSCSYS ISVGTRFKMH FESEDAAERR CTGLITAVSD LDPVQWPGSK WRCLVVRWDE 360 DDVDNSLHNR VSPWELEPTG SVSCPSSLLV SGSKRTRISI PSLGTDYPHP SGSGYQSLRE 420 SARFQEVLQG QEIFGFKSPY NGADATLPQL SEMRSHHLPE MRRCIANPNS CLLAGSGGNT 480 RVPPGNSDFY YQGTGFGESV RFHKVLQGQE IVPVLPSFRG MAIESLREND GSKLFESYGT 540 GRCSAAPLQG YCTFIQPCTP TAQVSSPSSV LMFQHAASQL PCTHSLYDAN EKEKADNSNL 600 SGPFSSADAD HVQQTSSTTR VQPQASFANA FNQGNGFTKE QCENLSMYKA PIHKNSQSIL 660 HGNGSSCRLF GFPLTEKIPV TNVVSSSFNE STLLEASIKS SFSIQRPQMP SKNTGHGCTR 720 AGLLISRSLL DMPI

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence

MGIDLNTIEE EEEDDPSELR PLTPSPQAGG VGSVCLELWH ACAGPRISLP KKGSLVVYLP  60
QGHLEHLAGG QHAGGGGMLL RHDVPPHVFC RVVEVQLRAE AATDEVYAQL SVIAESEGFD  120
GQIHGVAEGE GEEVDEMDAG DQSPIPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY  180
RQQRPSQELI AKDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGGN  240
GELRLGIRRA SQLKGNISGI HNLNVGVGAL ASLANAVLTK KMFQINYNPR VNQSEFIIPY  300
WKFRKSCSYS ISVGTRFKMH FESEDAAERR CTGLITAVSD LDPVQWPGSK WRCLVVRWDE  360
DDVDNSLHNR VSPWELEPTG SVSCPSSLLV SGSKRTRISI PSLGTDYPHP SGSGYQSLRE  420
SARFQEVLQG QEIFGFKSPY NGADATLPQL SEMRSHHLPE MRRCIANPNS CLLAGSGGNT  480
RVPPGNSDFY YQGTGFGESV RFHKVLQGQE IVPVLPSFRG MAIESLREND GSKLFESYGT  540
GRCSAAPLQG YCTFIQPCTP TAQVSSPSSV LMFQHAASQL PCTHSLYDAN EKEKADNSNL  600
SGPFSSADAD HVQQTSSTTR VQPQASFANA FNQGNGFTKE QCENLSMYKA PIHKNSQSIL  660
HGNGSSCRLF GFPLTEKIPV TNVVSSSFNE STLLEASIKS SFSIQRPQMP SKNTGHGCTR  720
AGLLISRSLL DMPI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-168	ARF family protein