PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020696782.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 473aa MW: 51398.4 Da PI: 7.3587

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020696782.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.2e-06	249	269	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+r G+C+ Gd C +aHg XP_020696782.1 249 PCVEFRR-GQCPKGDVCEYAHG 269 7999999.*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MGFPVSAAST AVDVVSELLE LAASDYVTRF RLAASREPAA LHVSGPWYGR CLLSSRMTIL 60 RRTPLMIAAA FGSLNVLQFI LSLSAAVDVD VDLRCGPDAV TALHCAVAGG GPAASLTVTL 120 LLIAGADPNA VDAAGRRPID LIPTSPIFSS LHSSLETVLC NGSPPVTPSS DSTSSSSSPQ 180 EKKKGYTIDS SIPDVKSSIY SSDEFRMFSF KIKPCSRAYS HDWTECPFVH PGENARRRDP 240 RRFNYSCTPC VEFRRGQCPK GDVCEYAHGV FECWLHPAQY RTRLCKDGDC CNRRVCFFAH 300 STSDLRTLPN SRSLALPQLL VRSARSSEFA PANCASPRFQ SDYFSSNLSP MSRIQQQSIL 360 SPRALNSLHC VSSPRAISPL GVPVGSPSFL LGSLPSERVK QQQNSMHDYE NVKQELVGIE 420 PDLSWVQSLV GKNDIGKGCC FDDGKALSSS IDDEHAILGD WLEQMQLVQK VAL

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MGFPVSAAST AVDVVSELLE LAASDYVTRF RLAASREPAA LHVSGPWYGR CLLSSRMTIL  60
RRTPLMIAAA FGSLNVLQFI LSLSAAVDVD VDLRCGPDAV TALHCAVAGG GPAASLTVTL  120
LLIAGADPNA VDAAGRRPID LIPTSPIFSS LHSSLETVLC NGSPPVTPSS DSTSSSSSPQ  180
EKKKGYTIDS SIPDVKSSIY SSDEFRMFSF KIKPCSRAYS HDWTECPFVH PGENARRRDP  240
RRFNYSCTPC VEFRRGQCPK GDVCEYAHGV FECWLHPAQY RTRLCKDGDC CNRRVCFFAH  300
STSDLRTLPN SRSLALPQLL VRSARSSEFA PANCASPRFQ SDYFSSNLSP MSRIQQQSIL  360
SPRALNSLHC VSSPRAISPL GVPVGSPSFL LGSLPSERVK QQQNSMHDYE NVKQELVGIE  420
PDLSWVQSLV GKNDIGKGCC FDDGKALSSS IDDEHAILGD WLEQMQLVQK VAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-105	C3H family protein