PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020696010.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 346aa MW: 38067.2 Da PI: 6.8811

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020696010.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	97	120	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +kt+lC+ f++ GtC+y +C+FaH XP_020696010.1 97 FKTKLCCKFRA-GTCPYITNCNFAH 120 69*******.*********** PP
2	zf-CCCH	20.6	8e-07	169	194	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk ++C+ f+ C+yGd C++ H+ XP_020696010.1 169 YKGRNCKKFYTEEGCPYGDACTYLHD 194 899**********************7 PP
3	zf-CCCH	42.8	8.5e-14	229	253	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +kt++C+ + tG+C++G++C+FaH XP_020696010.1 229 WKTRICNKWEMTGYCPFGSKCHFAH 253 8************************ PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MDYGGRSDSV IEIIPDASAI CSEPILPSHD QSIWATEDDY RAWNGDSSMD SFSNQTNDGR 60 QSQSRAGSEQ PHSKKPRTSS QADSGLSKSK VLGKMFFKTK LCCKFRAGTC PYITNCNFAH 120 ALDELRKPPP NWQEIVAAHE DGNLPEPREE HQIPILTTSP GVGEGQRSYK GRNCKKFYTE 180 EGCPYGDACT YLHDELKPRE SVAISLSPTV GGGGYAAGGN GMNQKPSNWK TRICNKWEMT 240 GYCPFGSKCH FAHELHRYGG GLVEMEPRDA SATTTDLKQA GASTKTITDA VVASNTSVPH 300 GDAYHVGAPA QRSNMVNQRQ IQRPVQNWKG PDKISRIYGD WIDDNE

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MDYGGRSDSV IEIIPDASAI CSEPILPSHD QSIWATEDDY RAWNGDSSMD SFSNQTNDGR  60
QSQSRAGSEQ PHSKKPRTSS QADSGLSKSK VLGKMFFKTK LCCKFRAGTC PYITNCNFAH  120
ALDELRKPPP NWQEIVAAHE DGNLPEPREE HQIPILTTSP GVGEGQRSYK GRNCKKFYTE  180
EGCPYGDACT YLHDELKPRE SVAISLSPTV GGGGYAAGGN GMNQKPSNWK TRICNKWEMT  240
GYCPFGSKCH FAHELHRYGG GLVEMEPRDA SATTTDLKQA GASTKTITDA VVASNTSVPH  300
GDAYHVGAPA QRSNMVNQRQ IQRPVQNWKG PDKISRIYGD WIDDNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-104	C3H family protein