PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020696004.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 349aa MW: 38266.4 Da PI: 6.8811

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020696004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	97	120	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +kt+lC+ f++ GtC+y +C+FaH XP_020696004.1 97 FKTKLCCKFRA-GTCPYITNCNFAH 120 69*******.*********** PP
2	zf-CCCH	20.6	8.1e-07	169	194	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk ++C+ f+ C+yGd C++ H+ XP_020696004.1 169 YKGRNCKKFYTEEGCPYGDACTYLHD 194 899**********************7 PP
3	zf-CCCH	43.4	5.5e-14	229	254	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_020696004.1 229 WKTRICNKWEMTGYCPFGSKCHFAHG 254 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MDYGGRSDSV IEIIPDASAI CSEPILPSHD QSIWATEDDY RAWNGDSSMD SFSNQTNDGR 60 QSQSRAGSEQ PHSKKPRTSS QADSGLSKSK VLGKMFFKTK LCCKFRAGTC PYITNCNFAH 120 ALDELRKPPP NWQEIVAAHE DGNLPEPREE HQIPILTTSP GVGEGQRSYK GRNCKKFYTE 180 EGCPYGDACT YLHDELKPRE SVAISLSPTV GGGGYAAGGN GMNQKPSNWK TRICNKWEMT 240 GYCPFGSKCH FAHGAAELHR YGGGLVEMEP RDASATTTDL KQAGASTKTI TDAVVASNTS 300 VPHGDAYHVG APAQRSNMVN QRQIQRPVQN WKGPDKISRI YGDWIDDNE

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MDYGGRSDSV IEIIPDASAI CSEPILPSHD QSIWATEDDY RAWNGDSSMD SFSNQTNDGR  60
QSQSRAGSEQ PHSKKPRTSS QADSGLSKSK VLGKMFFKTK LCCKFRAGTC PYITNCNFAH  120
ALDELRKPPP NWQEIVAAHE DGNLPEPREE HQIPILTTSP GVGEGQRSYK GRNCKKFYTE  180
EGCPYGDACT YLHDELKPRE SVAISLSPTV GGGGYAAGGN GMNQKPSNWK TRICNKWEMT  240
GYCPFGSKCH FAHGAAELHR YGGGLVEMEP RDASATTTDL KQAGASTKTI TDAVVASNTS  300
VPHGDAYHVG APAQRSNMVN QRQIQRPVQN WKGPDKISRI YGDWIDDNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-108	C3H family protein