PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020695842.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 347aa    MW: 40462.6 Da    PI: 9.0647
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020695842.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.3e-14361161299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++ + +p kf++++  ++  +  + le +sg  We+ l  +k ++r ++ +GWk+F +ang++ g ++vF + g+s f   v++f++
  XP_020695842.1  36 TLK-MEFPQKFVKNF-RVELID-VVALEAPSGILWEIGL--CKEQDRLYFNGGWKKFIEANGIEKGYILVFDYAGDSMF--QVRIFDS 116
                     444.88999**9666.343343.799999**********..**********************************9999..9999986 PP
2B347.82.6e-15239331195
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     f+k  t s+ +++  + +pkkf++ h   +++++ +t++d+s ++W v+++ +++s++ + +k   + v++n+++ gD +vF+l+++ s+  + +
  XP_020695842.1 239 FVKLITLSNITSNPFMAIPKKFVSIHF--PRKPFGITVRDQSKKKWYVNCS-WRSSSWGFQGKSMAKLVHENKIQKGDACVFELIEKsSDVVMQM 330
                     6677777777888889*******8887..457778***************6.677778889***********************98756665555 PP

                     E CS
              B3  95 k 95 
                     +
  XP_020695842.1 331 R 331
                     5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MRERCWSCKK WEEHFYWDHL EESNLHFMKV MDGDFTLKME FPQKFVKNFR VELIDVVALE  60
APSGILWEIG LCKEQDRLYF NGGWKKFIEA NGIEKGYILV FDYAGDSMFQ VRIFDSTGCV  120
KAASNQINNP RAKQKMVDQT WQNFQRTHSS KVACNDYPML HEQTTDSGSA SGIRFIEEEY  180
GMDKFKDDGR LGSSKICKKE CSEVQPYSTS ETKLSLRNSQ DIVNILEQKF ASKRGNWSFV  240
KLITLSNITS NPFMAIPKKF VSIHFPRKPF GITVRDQSKK KWYVNCSWRS SSWGFQGKSM  300
AKLVHENKIQ KGDACVFELI EKSSDVVMQM RIVRAMEICS ILKKYWF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-26B3 family protein