PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020695502.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 365aa    MW: 39959.4 Da    PI: 7.4123
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020695502.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.7e-08122142526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck+Gd C +aHg
  XP_020695502.1 122 ACPDFRK-GNCKRGDACEYAHG 142
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MMGEGIHRNL MVDVPPWSIA DDQLTVSDLG GCIAGDYLLS EAVMASLQRY LPANEVTDTE  60
DAADLADPPI DAYSCDEFRM YEFKIRRCAR GRSHDWTECP YAHPGEKARR RDPKIYHYSG  120
TACPDFRKGN CKRGDACEYA HGVFECWLHP ARYRTQPCKD GTACRRRVCF FAHTPEQLRV  180
LPSPQKQSPR AVLESYDGSP MRLHAVDAYF GKGLIPSTPN LTLISPPMSP TADSPPISPA  240
RRGSWQVGSP VNEVLMSLRK LHLSKVKSVP CSSFDAVQGV GSVLGLKPGF SSLPSTPTRA  300
LVSGIGGSPM SSDGFNDVGE PVERVIESGR ALRAKMYERL SRESGLGQVE VGSAPDVGWV  360
SELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-108C3H family protein