PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020695268.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 274aa MW: 30816.4 Da PI: 4.8551

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020695268.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.4	7.7e-21	68	121	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++ eLAkklgL+ rqV vWFqNrRa++k XP_020695268.1 68 KKRRLTPEQVHLLERSFEAENKLEPEKKSELAKKLGLQPRQVAVWFQNRRARWK 121 5678*************************************************9 PP
2	HD-ZIP_I/II	132.7	1.3e-42	67	158	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv+lLE+sFe+e+kLepe+K+ela++LglqprqvavWFqnrRAR+ktkqlE+dye+Lk++ydal +++++L k+++ Lr+++ XP_020695268.1 67 EKKRRLTPEQVHLLERSFEAENKLEPEKKSELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYERLKASYDALLADHDTLLKDNDCLRSQVI 158 69**************************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MDSGRLIFDS SSSHGGHMLI LGGSGSPLFR GTRSMLSLEE GAHKRRPFFT TAEELLEEEY 60 YDEQLPEKKR RLTPEQVHLL ERSFEAENKL EPEKKSELAK KLGLQPRQVA VWFQNRRARW 120 KTKQLERDYE RLKASYDALL ADHDTLLKDN DCLRSQVISL TEKLREKELE VAVKELDSDI 180 EKTAIEGQPS PPSMEMLATL QQRGGDRLST GSRGSTVVDG QGPPALPVAD SSVDSYFQES 240 LIEGGGCTSD DGCSYLPGDI FQNASHADNW WVWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	124	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	7e-70	HD-ZIP family protein