PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020694752.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 320aa MW: 37117.8 Da PI: 9.882

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020694752.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.9e-15	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd +l +vkq+G++ W++I+++m+ + R +k+c +rw +yl XP_020694752.1 4 RQRWRAEEDAILRAYVKQYGPREWNLISQRMNvcLERDAKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	35.7	1.9e-11	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l +++ ++G++ Wk+Ia++++ gRt+k + +w + XP_020694752.1 59 KGSLTEEEQRLVIHLQSKHGNK-WKKIASEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MKERQRWRAE EDAILRAYVK QYGPREWNLI SQRMNVCLER DAKSCLERWK NYLKPGIKKG 60 SLTEEEQRLV IHLQSKHGNK WKKIASEVPG RTAKRLGKWW EVFKEKQQRE LKESNRVSSA 120 PIEPGKYDRI LESFAEKLVK QRPVAPLLMA TPLLPPWLAN SNNTSSPSVA LSLSPSTIPA 180 APPAPWVQIE RGAPDSTLGL INSQQNVFAE LVECCRELEE GYQVWAAHKK EAAWRLKRVE 240 LQLESEKACK RREKIEEIEL KVRELREEQQ LALERIEAEC REQLLVLRRD AEAKEQKLAE 300 LWSAKHGTLS KLIKQMTGHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	2e-77	MYB family protein