PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020693885.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 361aa    MW: 41356.5 Da    PI: 5.0586
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020693885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-0690113226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k  lC ff + G+C  G +CkF+H+
  XP_020693885.1  90 KSILCEFFKA-GQCAKGFKCKFSHD 113
                     6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MPPKQQSKSE LAKKQKVVED KTFGLKNKNK SKNVQKYVQS LQQSVQPRPD PSKVAAKKKL  60
EDDKAREKEL NDLFKVAVNQ PKVPLGVDPK SILCEFFKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DQESTETMDD WDQETLEKVV ESKKSEYNQN KPTEIVCKFF LEAVEKKQYG  180
WFWSCPNGGK DCHYRHALPP GYVLKSQMKA LLEEEADKKP IEDEIEDQRG KLSSSTPMTP  240
ELFQQWKDKK MAEKEAALAA NQAERAKNDR MSGRELFLSD ASLFVDDAEA YEKYQREESD  300
SEEKLQVKMT KTGEPSTSKP VDKNEILAED DDDDLDIDEL NELEATLSRT TLEIREPGLQ  360
A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-156C3H family protein