PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020693821.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 230aa MW: 25398.2 Da PI: 8.4795 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.2 | 1.4e-20 | 17 | 63 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ien+ rqv fs+Rr+ ++KKA ELS+LC+ae+ +++fs+ gk + XP_020693821.1 17 KSIENEEARQVCFSNRRAAVFKKATELSILCGAEIGIVVFSPAGKPF 63 79*****************************************9855 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MARKKRHSIG RQKIAIKSIE NEEARQVCFS NRRAAVFKKA TELSILCGAE IGIVVFSPAG 60 KPFSFGHPSL DYITKRFLGG GCSGSGGEVV GPLCGMFVEG QKLLQLNQEH AGLTEKLEEA 120 RRMRAKLEAG VAAQRGRSGL SCDVEVHEMC VEDLESFQKR LEELRRGVTN RREELEILCI 180 DTKVARGGVP PQLGYGGWYL GGYNGLYLTP APVGWFYGHD QDMNMGFSVW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-28 | M-type_MADS family protein |