PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020693136.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 326aa MW: 35849.6 Da PI: 6.3637

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020693136.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.7	8.3e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W + ++++g +R++k+c++rw++yl XP_020693136.2 14 KGPWSPEEDAKLKAYIEKYGTGgNWIALPQKIGMKRCGKSCRLRWLNYL 62 79*****************************77**********97 PP
2	Myb_DNA-binding	41.4	3.2e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia++++ gRt++++k++w++ XP_020693136.2 69 GGFSEEEDNIICSLYVTIGSR-WSFIASHLP-GRTDNDIKNHWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MGRTPCCDKA NVKKGPWSPE EDAKLKAYIE KYGTGGNWIA LPQKIGMKRC GKSCRLRWLN 60 YLQPNLKHGG FSEEEDNIIC SLYVTIGSRW SFIASHLPGR TDNDIKNHWN TRLKKKLLGK 120 SRKDHQKQTR RIPKLLEPKN IEETNDFYSI QNPAALPSNP ETDSQASIKK LLMKLGGRIS 180 SDEAEIPPLI NAPDQNNLYG NTNACLMASS AQLSSYNECL STNLNDIFAS NEVKLEGFED 240 YSLYGMTSST TMAEEITGLI GMPEALTWNT SDVSSLIYPS MASTAVNYQG SMQHFSGAGG 300 GIEVLATSVI AVDIDTVSDI EPVVGA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	3e-76	MYB family protein