PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020692914.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 263aa MW: 29633.5 Da PI: 8.1656 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.7e-08 | 51 | 75 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f+ G C+ G++C+FaH+ XP_020692914.1 51 FKTRMCVKFMS-GSCSKGGSCNFAHS 75 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.9 | 2.6e-06 | 133 | 146 | 14 | 27 |
--TTTTT-SS-SSS CS zf-CCCH 14 tCkyGdrCkFaHgp 27 C+yGd+C+F+H++ XP_020692914.1 133 LCPYGDKCSFSHVQ 146 5***********86 PP | |||||||
3 | zf-CCCH | 37.5 | 3.9e-12 | 163 | 188 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ ++ +G C+yGd+C++aHg XP_020692914.1 163 WKTKICHKWSTSGSCSYGDQCSYAHG 188 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence |
MDHPFAFPGP FDFSITTEQR ISEEIGNCPQ IPPFFPNLTY HGSSTPQSVY FKTRMCVKFM 60 SGSCSKGGSC NFAHSIEELR RPAGNVDVRA LFPQVDGSRR NEQNPIISEL FDAREKQKLH 120 RNKVCWKFYH GELCPYGDKC SFSHVQPGSL QDSSLPSQKP MCWKTKICHK WSTSGSCSYG 180 DQCSYAHGHS ELRKLGGDND ELVEKNVVAA RPKCAINITD EILSKTTAEP RESREAAVSQ 240 PKIRTLTLKK ISRIYGDWID DFA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 3e-32 | C3H family protein |