PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020692913.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 264aa MW: 29690.6 Da PI: 8.1656

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020692913.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.8e-08	51	75	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f+ G C+ G++C+FaH+ XP_020692913.1 51 FKTRMCVKFMS-GSCSKGGSCNFAHS 75 69*******.***********8 PP
2	zf-CCCH	18.9	2.6e-06	134	147	14	27
--TTTTT-SS-SSS CS zf-CCCH 14 tCkyGdrCkFaHgp 27 C+yGd+C+F+H++ XP_020692913.1 134 LCPYGDKCSFSHVQ 147 5***********86 PP
3	zf-CCCH	37.5	3.9e-12	164	189	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ ++ +G C+yGd+C++aHg XP_020692913.1 164 WKTKICHKWSTSGSCSYGDQCSYAHG 189 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MDHPFAFPGP FDFSITTEQR ISEEIGNCPQ IPPFFPNLTY HGSSTPQSVY FKTRMCVKFM 60 SGSCSKGGSC NFAHSIEELR RPAGNVDVRA LFPQVDGSRR NEQNPIISGE LFDAREKQKL 120 HRNKVCWKFY HGELCPYGDK CSFSHVQPGS LQDSSLPSQK PMCWKTKICH KWSTSGSCSY 180 GDQCSYAHGH SELRKLGGDN DELVEKNVVA ARPKCAINIT DEILSKTTAE PRESREAAVS 240 QPKIRTLTLK KISRIYGDWI DDFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	3e-32	C3H family protein