PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020692757.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HSF

Protein Properties

Length: 346aa MW: 38560.3 Da PI: 4.5363

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020692757.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.2	8.5e-36	27	118	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+ ++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+k++l++ XP_020692757.1 27 FLTKTYQMVDDPIVDDVISWNEEGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRMLCD 112 9***************************************************************99.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_020692757.1 113 IQRRKI 118 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGPTPAPADQ PDESPPPEQQ RALPTPFLTK TYQMVDDPIV DDVISWNEEG STFVVWRPAE 60 FARDLLPKYF KHNNFSSFVR QLNTYGFRKI VPDRWEFAND CFRRGEKRML CDIQRRKISS 120 PVALAVVGST SAPAMPVNRA GSPTNSLEEQ GEQVLSSNSS PPPPGSTTEL VEENERLRKE 180 NRKLANELSK MKNLCNNIFL LMSKYAGSAP QAQEALDLMP AKQVSEEAEE LGVKAESSPP 240 PPPPSSAAGS SSWYFEPTPM LFGFSIGEKR CREVEDCEDE LPAPSLEPVI KSEPFEPDSY 300 QLSLPAAEEA ETEAERRPWV VYCPRPQRVC NGKDRVLMES DGAHVS

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGPTPAPADQ PDESPPPEQQ RALPTPFLTK TYQMVDDPIV DDVISWNEEG STFVVWRPAE  60
FARDLLPKYF KHNNFSSFVR QLNTYGFRKI VPDRWEFAND CFRRGEKRML CDIQRRKISS  120
PVALAVVGST SAPAMPVNRA GSPTNSLEEQ GEQVLSSNSS PPPPGSTTEL VEENERLRKE  180
NRKLANELSK MKNLCNNIFL LMSKYAGSAP QAQEALDLMP AKQVSEEAEE LGVKAESSPP  240
PPPPSSAAGS SSWYFEPTPM LFGFSIGEKR CREVEDCEDE LPAPSLEPVI KSEPFEPDSY  300
QLSLPAAEEA ETEAERRPWV VYCPRPQRVC NGKDRVLMES DGAHVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	6e-64	HSF family protein