PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020692071.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 385aa    MW: 42703 Da    PI: 8.6507
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020692071.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33e-07739437
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     W t+E+++l  av ++G+ +W++Ia +++ +Rt+
   XP_020692071.1  7 WGTWEELILGGAVLLHGTADWNAIATELQ-NRTD 39
                     *****************************.***7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    
MALFSLWGTW EELILGGAVL LHGTADWNAI ATELQNRTDF PDLFTPQVCE AKYEDLQERY  60
SGCETLQSKL ESLTAEKESD CNNLDYFTSR SQSISPADVA NGADYFCKEA SIDGLSAGSF  120
TRNTERDWAP EIEIAASCSL QDDDYRIEMA SNLCADFGSG NFRRKRDPRK RKPCNSFKEA  180
SVGESETRRE DSSEGCMPSS EKFCAVQQEE PVVDLAGIVD SISKHKDVSI LRYKIEKQKN  240
SKYKKLIRRH VDLETISSGI SNGSISSAKE LFRDLLLLCN NALVFHKRNS PKHKSAHSLR  300
NIVMKNLRHT FHSPISKPCE VDNKLQNGMA YKTFIGRQAL VAGKGAESPA RKRGGGRPPK  360
GSRRGGGGSP VESSSSTKGR KKVCR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173PRKRKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.12e-18MYB_related family protein