PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020691113.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 364aa    MW: 40765.3 Da    PI: 7.4573
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020691113.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-08123144426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C++f++ G Ck Gd+C FaHg
  XP_020691113.1 123 VACPDFRK-GNCKKGDTCEFAHG 144
                     68******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
MEEILRKPTV EVPSWSPFDD HLNGMELHLP VSGISGEYLL TEAALAELQC YLPLNEVMAE  60
ADEMEELTDL PVDKYSSDEF RMYEFKIRRC TRSRSHDWTE CPYAHPGEKA RRRDPRNHQY  120
SGVACPDFRK GNCKKGDTCE FAHGVFECWL HPARYRTQHC KDGTACRRRV CFFAHTPEQL  180
RVLPIQLQQI SRAIDSYDGS PQRNQTLDAY FPKGVIPSSP TSTLISPPMS SPASSPPVSP  240
SGVRIRRATW QMGSAVNEVI ASLGKLHLRK IGGGLSASVV GFRPMFCSLP SSPPPAATAA  300
VGRGWLDVER VREKDEVVAW VESGRPLRAK MYERMSKESG LTRPETGPTL ASDPDFGWVS  360
ELIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.18e-82C3H family protein