PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020690564.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 286aa    MW: 32205.3 Da    PI: 5.2642
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020690564.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
   XP_020690564.1 16 KGSWTPQEDIRLISYIRKHGHGNWRALPKQAGLLRCGKSCRLRWINYL 63
                     799*****************************99************97 PP
2Myb_DNA-binding54.42.8e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
   XP_020690564.1  69 RGNFTKEEEDTIINLHELLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MGRGRAPCCQ KIGLHKGSWT PQEDIRLISY IRKHGHGNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDIKRG NFTKEEEDTI INLHELLGNK WSKIAACLPG RTDNEIKNVW NTHLKKRIKH  120
QDYTAQSSMT NKSWSEVNPP SSASSGITSF TEGDELSLEK IEIPIEPQID MWDILDSSLS  180
PNPSSLPLPP LAAVENDDIF SDIPIDPDLW SNTSDGGKLA DDSKKWLAYL EEELGLFDEA  240
EDKEREELIS MEEGNLMGSY FHKRPSSSSS SSPSLTKLVD LECINA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-68MYB family protein