PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020690017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 34924.1 Da PI: 4.8474 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT eEde+lv+++++ G g+W++ ++ g+ R++k+c++rw +yl XP_020690017.1 14 RGRWTVEEDEILVNYIAENGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE+e++++++ G++ W+ Ia+ ++ gRt++++k++w+++l XP_020690017.1 67 RGSISKEEEEIIIKLHSSIGNR-WSVIAAQLP-GRTDNEIKNYWNSHL 112 78889*****************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence |
MVRAPCCDKK GLKRGRWTVE EDEILVNYIA ENGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRSDLKRGSI SKEEEEIIIK LHSSIGNRWS VIAAQLPGRT DNEIKNYWNS HLSRRIHCFR 120 RHGDSETFIY DIGKIPSPGK RRGGRTSRAA MMKNSILKVS GSIRKDQTNQ DPNQIMNNTD 180 NNLCIASSSS ALTEKENSSS TFDFDFDFEE VLGPNGDKDE VSLEENEIIE SRSDDGPCAA 240 QKEVELAMEG KESGTVMTEM EKMLKWDLES LEAKLWEEDG SEMWPWFYDV SGNSSFDEES 300 LCSWLLA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-62 | MYB family protein |