PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020689847.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 205aa MW: 23175.9 Da PI: 5.7181

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020689847.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.4e-17	25	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W+ ar g++Rt+k+c++rw++yl XP_020689847.2 25 KGPWTMEEDLILINYIAIHGEGVWNNLARSAGLKRTGKSCRLRWLNYL 72 79********************************************97 PP
2	Myb_DNA-binding	53.3	6.4e-17	78	121	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ d++ ++G++ W++Iar ++ gRt++++k++w++ XP_020689847.2 78 RGNITPEEQLLIMDLHSRWGNR-WSKIARQLP-GRTDNEIKNYWRT 121 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence
MGDQVEAISV DKRINNNEES EVVRKGPWTM EEDLILINYI AIHGEGVWNN LARSAGLKRT 60 GKSCRLRWLN YLRPDVRRGN ITPEEQLLIM DLHSRWGNRW SKIARQLPGR TDNEIKNYWR 120 TRIQKKVKDG EPVDCSSQIV NDEGSSSHAG GLEEAMAAQP SYPIYSDIAN PHEAYVPAAY 180 SGSINTSETY LSAEDFWAVQ SLNGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40350.1	7e-75	MYB family protein