PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020689559.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 220aa MW: 25512.9 Da PI: 4.7485 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.5e-18 | 56 | 109 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le F ++r++ ++ LA+++gL+ +qV vWFqNrRa++k XP_020689559.1 56 KKRRLSDEQVRFLEMNFGMERKLESCRKINLASEIGLEPKQVAVWFQNRRARWK 109 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.7 | 1.5e-38 | 56 | 146 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls+eqv++LE++F +e+kLe+ rK +la+e+gl+p+qvavWFqnrRAR+k+kqlE++y +Lk+++da++ e++rLe+e +L+++l XP_020689559.1 56 KKRRLSDEQVRFLEMNFGMERKLESCRKINLASEIGLEPKQVAVWFQNRRARWKSKQLEEEYIHLKSSHDAVMIEKCRLENEILNLKDKLV 146 9**************************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MEDAMKSMEE EDSLFSSIVS SGFYPPMQQE ESKVRRPRKK AKDVIDGEAE VCVEGKKRRL 60 SDEQVRFLEM NFGMERKLES CRKINLASEI GLEPKQVAVW FQNRRARWKS KQLEEEYIHL 120 KSSHDAVMIE KCRLENEILN LKDKLVQSEE EIRRLSSPSA ASELTGVGSP ISPLTMTTYF 180 GEFGMEEENG IMHMSPYSDN YSYRMEMTEE PSLWDGMTNQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 59 | RKKAKDVIDGEAEVCVEGKKRR |
2 | 104 | 112 | RRARWKSKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 1e-44 | HD-ZIP family protein |