PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020689474.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 472aa MW: 52670 Da PI: 8.5403

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020689474.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	124.4	4.9e-39	174	250	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dl+ ak+yhr+h+vCe hsk+p v+v+g+e+rfCqqCsrfh+l efD++krsCrrrL++hn+rrrk+q+ XP_020689474.1 174 CQVEGCSIDLTAAKDYHRKHRVCERHSKSPRVIVAGHERRFCQQCSRFHDLCEFDQKKRSCRRRLSDHNARRRKAQP 250 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MEWNFKNPLQ WDWENLGLFS GKESEVSKST ELSEWRAEGG AISNGSMYSS GSGTCSGSEL 60 GNGSLKKTVT ASVGFLSKEG SKTSEVNLEA AQGIIKNQFK NYEMAQGEDF RTSPVIVRCV 120 GTGEPPIGLK LGKRTYFENL GSANIKTSSV SMTPPAASVR RSRASHQAIQ HAYCQVEGCS 180 IDLTAAKDYH RKHRVCERHS KSPRVIVAGH ERRFCQQCSR FHDLCEFDQK KRSCRRRLSD 240 HNARRRKAQP ETISFNPSTL PSLFYDERQQ MSFFLNLAPF SHVRPSTSSM LDQSDGFSLS 300 MRKGSWLKTI KADVDRQLQF PEMDFSNKIK PSRDGLNRLI PFKCTTNEVL NQGEEAYVPT 360 SNLNGAPDLR RALSLLSSDA WCPSSTEQSS MIQLAITNPI TTSNLRVPTA NLAPECWQND 420 NSLAEQALPF NLHGNGSHIQ DLQLSKAPYE SSFFESNQAF SKSDGHFTEF KT

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MEWNFKNPLQ WDWENLGLFS GKESEVSKST ELSEWRAEGG AISNGSMYSS GSGTCSGSEL  60
GNGSLKKTVT ASVGFLSKEG SKTSEVNLEA AQGIIKNQFK NYEMAQGEDF RTSPVIVRCV  120
GTGEPPIGLK LGKRTYFENL GSANIKTSSV SMTPPAASVR RSRASHQAIQ HAYCQVEGCS  180
IDLTAAKDYH RKHRVCERHS KSPRVIVAGH ERRFCQQCSR FHDLCEFDQK KRSCRRRLSD  240
HNARRRKAQP ETISFNPSTL PSLFYDERQQ MSFFLNLAPF SHVRPSTSSM LDQSDGFSLS  300
MRKGSWLKTI KADVDRQLQF PEMDFSNKIK PSRDGLNRLI PFKCTTNEVL NQGEEAYVPT  360
SNLNGAPDLR RALSLLSSDA WCPSSTEQSS MIQLAITNPI TTSNLRVPTA NLAPECWQND  420
NSLAEQALPF NLHGNGSHIQ DLQLSKAPYE SSFFESNQAF SKSDGHFTEF KT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	247	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	2e-58	SBP family protein