PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020689469.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 1168aa MW: 129938 Da PI: 6.7269

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020689469.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68.9	6.7e-22	139	244	1	99
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F XP_020689469.1 139 FCKTLTASDTSTHGGFSVPRRAAEKIfpplnymqdfsM-QPPA-QELQARDLHDSIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI- 230 99*******************************954.4444.49********************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++++l+++++r+ XP_020689469.1 231 -RDEKQQLLLGIRRA 244 .5688889**997 PP
2	Auxin_resp	119.9	1.9e-39	269	352	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldp+rW+nS+Wr+L+ XP_020689469.1 269 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKAVYgHQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPLRWKNSQWRNLQ 352 79********************************9*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1168 aa Download sequence
MMKSPATAAA AAAATATAAA NPGGDGGERK TINPELWHAC AGPLVTLPPV GSLVAYFPQG 60 HSEQVAASMQ KDIDAHFPNY PNLPSKLICL LHNVTLHADT ETDEVYAQMT LQPVNSYDEK 120 TLLTTDLALK TSKPQTEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLNY MQDFSMQPPA 180 QELQARDLHD SIWTFRHIYR GQPKRHLLTT GWSLFVSGKR LLAGDSVLFI RDEKQQLLLG 240 IRRANRQPTN ISSSVLSSDS MHIGILAAAA HAAANSSPFT IFYNPRASPS EFVIPLAKYN 300 KAVYGHQLSL GMRFRMMFET EESGTRRYMG TITGISDLDP LRWKNSQWRN LQVGWDESAP 360 GERRNRVSIW EIEPVAAPFF ICPPPFFRTK RPRQPGMPDD ESSEMETLFK RAMPWLGEEI 420 CIKDAQSQNT VMPGLSLAQW MSMQQNPLLG NSAIQSDYLR SLTNPIIQNL GAADISRQLG 480 LQAQLLQQNN MQFNSPRLPQ QAQQVDTLPK IQSPLNQLSS VSQAQQPMQD ISMQQRQQFI 540 NQTVSLSQTQ TPQQQQPSLL QNNLTQSQIM VQNQIPQQQS LMQNQHVMQA NLVNNHSQQH 600 QQLLLHQQQM QQQNQQQQQM QHQNQQQQQL QHQNQQQQQL IPQNRMPVQA SNQTNQLHLS 660 EHQLQLQLLQ KLQQQQQQQL QQQSLLSQSL LQQSQLPQIQ EQQITLLEAS QHPAYSNPSS 720 QQPQSSPQQC GKVASMNVRL PQSSQLLQQK LQQQQTPLAE LPMGVLPAPS TNVLSTANLL 780 AAGGTHTVLT DDAPSCSTSP STNNSAILPQ PVFNRISHHN MVATEKVSPS PVTILNPCSL 840 EALAASTKLV KDIPKLEQNV KPSVPIPKLQ GQGVAPQVYL NNSAQMDYLD SSSSATSACL 900 SQNDGSLQQT LPLSSFNQPS LFRSTLTDSD VQGTDLRNNT LFGVNIDVPL GVPLTNDTLL 960 ANSLDSGKYQ NQLTGNPITN YTTSKDAQQE LSSSMVSQSF GVPDMAFNSI DSSLTESSLL 1020 NRNSWGPTTQ FQRMRTFTKV YKRGAVGRSL DITRYSGYDE LKRDLARMFS IEGQLEERQR 1080 IGWKLVYVDH ENDVLLVGDD PWEEFVNCVR YIRILSPQEV QQMSLDGDLG NGILPHQACS 1140 SSDGGNAWRG QCDQNSGNPS TGSYDHLE

Sequence ? help Back to Top

Protein Sequence Length: 1168 aa Download sequence

MMKSPATAAA AAAATATAAA NPGGDGGERK TINPELWHAC AGPLVTLPPV GSLVAYFPQG  60
HSEQVAASMQ KDIDAHFPNY PNLPSKLICL LHNVTLHADT ETDEVYAQMT LQPVNSYDEK  120
TLLTTDLALK TSKPQTEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLNY MQDFSMQPPA  180
QELQARDLHD SIWTFRHIYR GQPKRHLLTT GWSLFVSGKR LLAGDSVLFI RDEKQQLLLG  240
IRRANRQPTN ISSSVLSSDS MHIGILAAAA HAAANSSPFT IFYNPRASPS EFVIPLAKYN  300
KAVYGHQLSL GMRFRMMFET EESGTRRYMG TITGISDLDP LRWKNSQWRN LQVGWDESAP  360
GERRNRVSIW EIEPVAAPFF ICPPPFFRTK RPRQPGMPDD ESSEMETLFK RAMPWLGEEI  420
CIKDAQSQNT VMPGLSLAQW MSMQQNPLLG NSAIQSDYLR SLTNPIIQNL GAADISRQLG  480
LQAQLLQQNN MQFNSPRLPQ QAQQVDTLPK IQSPLNQLSS VSQAQQPMQD ISMQQRQQFI  540
NQTVSLSQTQ TPQQQQPSLL QNNLTQSQIM VQNQIPQQQS LMQNQHVMQA NLVNNHSQQH  600
QQLLLHQQQM QQQNQQQQQM QHQNQQQQQL QHQNQQQQQL IPQNRMPVQA SNQTNQLHLS  660
EHQLQLQLLQ KLQQQQQQQL QQQSLLSQSL LQQSQLPQIQ EQQITLLEAS QHPAYSNPSS  720
QQPQSSPQQC GKVASMNVRL PQSSQLLQQK LQQQQTPLAE LPMGVLPAPS TNVLSTANLL  780
AAGGTHTVLT DDAPSCSTSP STNNSAILPQ PVFNRISHHN MVATEKVSPS PVTILNPCSL  840
EALAASTKLV KDIPKLEQNV KPSVPIPKLQ GQGVAPQVYL NNSAQMDYLD SSSSATSACL  900
SQNDGSLQQT LPLSSFNQPS LFRSTLTDSD VQGTDLRNNT LFGVNIDVPL GVPLTNDTLL  960
ANSLDSGKYQ NQLTGNPITN YTTSKDAQQE LSSSMVSQSF GVPDMAFNSI DSSLTESSLL  1020
NRNSWGPTTQ FQRMRTFTKV YKRGAVGRSL DITRYSGYDE LKRDLARMFS IEGQLEERQR  1080
IGWKLVYVDH ENDVLLVGDD PWEEFVNCVR YIRILSPQEV QQMSLDGDLG NGILPHQACS  1140
SSDGGNAWRG QCDQNSGNPS TGSYDHLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein