PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020689391.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 253aa MW: 27971.3 Da PI: 6.6421

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020689391.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	61.8	1.2e-19	105	168	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S....SSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa....edpkvveitYegeHnhe 59 Dg++WrKYGqK +++sefprsYY+Ct++ gC+++k +++++ ++p ++ Y+ +H+++ XP_020689391.1 105 DGHQWRKYGQKRIHSSEFPRSYYKCTHSkdqGCKATKTIQQKEdkisNNPPKYVVSYSVHHTCK 168 9************************98999*****9876111146778899999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MAEHPFSQSS TVIDHLSRGY ERLTQLLALI SSSPANPSTT APAMVLVDKA MCCIAAALSE 60 LQTSSPRSVD SPTAAEDHRN GTDSKKRCKK NVQSWTIVTS VPHFDGHQWR KYGQKRIHSS 120 EFPRSYYKCT HSKDQGCKAT KTIQQKEDKI SNNPPKYVVS YSVHHTCKAI ETHEIPIVMD 180 SLAITNEHST SSSQAASPDL SSPVLPKPVA DIEQVSPIMD YTEPDHGEAN WFEGSGLLSP 240 FADSDIDWER LMS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	1e-20	WRKY family protein