PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687963.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 438aa MW: 47789.2 Da PI: 7.7587

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687963.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.1	1.5e-08	117	136	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ ++ +GtC+yG++CkF H+ XP_020687963.1 117 CN-YFISGTCSYGESCKFLHS 136 66.8888*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MDIEAVERYG NRRIQNRIGS SQAAPDRGNS KVCFHWRAGR CSRFPCPFLH SELPQHSDGG 60 AKRAAGADER GFRPQGFVWR NSHTNGNSGP PSRWGKGRGG GAAGGVRPQR KALDKICNYF 120 ISGTCSYGES CKFLHSWFLS DSISLLTPLN GHQKDVTGIA LPTGSDKLYT GSKDETVRVW 180 DCQTGQCIGV VNLGGEVGCM ISEGPWIFVG VPNAIKAWNT QTTTDLSLSG PTGQVYAMSV 240 GNEMLFAGTQ DGRILAWRFR AVGDCFEPAA SLVGHRLPVV SMVVGAMRLY SGSMDHTVRV 300 WDLSTLQCIQ TLTDHTAVVM SVLCWDQFLL SCSLDKTIKV WVATESGNLE VTYTHQEEHG 360 VLALCGMHDA QAKPVLFCSC NDNTVRLYDL PSFNERGKIF AKEEVRAIQI GPGGLFFTGD 420 GTGELRVWKW LTSEVPAA

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MDIEAVERYG NRRIQNRIGS SQAAPDRGNS KVCFHWRAGR CSRFPCPFLH SELPQHSDGG  60
AKRAAGADER GFRPQGFVWR NSHTNGNSGP PSRWGKGRGG GAAGGVRPQR KALDKICNYF  120
ISGTCSYGES CKFLHSWFLS DSISLLTPLN GHQKDVTGIA LPTGSDKLYT GSKDETVRVW  180
DCQTGQCIGV VNLGGEVGCM ISEGPWIFVG VPNAIKAWNT QTTTDLSLSG PTGQVYAMSV  240
GNEMLFAGTQ DGRILAWRFR AVGDCFEPAA SLVGHRLPVV SMVVGAMRLY SGSMDHTVRV  300
WDLSTLQCIQ TLTDHTAVVM SVLCWDQFLL SCSLDKTIKV WVATESGNLE VTYTHQEEHG  360
VLALCGMHDA QAKPVLFCSC NDNTVRLYDL PSFNERGKIF AKEEVRAIQI GPGGLFFTGD  420
GTGELRVWKW LTSEVPAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25440.1	0.0	C3H family protein