PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020687940.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARF
Protein Properties Length: 954aa    MW: 107544 Da    PI: 6.7699
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020687940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.15.2e-21121222199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++       +++++ ++l  +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_020687940.1 121 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfTLQPPT-QELGANDLHDIVWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 212
                     99*****************************9666665.49************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_020687940.1 213 SQLLLGIRRA 222
                     7789999997 PP
2Auxin_resp113.42.1e-37247328182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     aaha++++s+F+++YnPras+seFv++++k++k+++++vs+GmRf+m+fete++  rr++Gt++g+sdld ++W+ S+Wr++
  XP_020687940.1 247 AAHAVANSSPFTIFYNPRASPSEFVIPLAKYNKTFYMQVSLGMRFRMMFETEECGVRRYMGTITGISDLDATQWKTSQWRNI 328
                     79******************************************************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 954 aa     Download sequence    
MKVPPANGFP ANTSEGERKS MNSELWHACA GPLVSLPPAG SHVVYFPQGH SEQKKMDGIP  60
TYPSLPSKLI CVLQNVTLHA DTETDEVYAQ MTLQPVNKFD REALLASEMG LEQNKQPTQF  120
FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFTLQPPTQE LGANDLHDIV WTFRHIYRGQ  180
PKRHLLTTGW SVFVSTKRLF AGDSVLFIRD EKSQLLLGIR RATRQQPTIS SSVLSSDSMH  240
IGILAAAAHA VANSSPFTIF YNPRASPSEF VIPLAKYNKT FYMQVSLGMR FRMMFETEEC  300
GVRRYMGTIT GISDLDATQW KTSQWRNIEV GWDELTAADR PSRVSLWEIE PVATPVYLSP  360
PPFFRPKFPK QPGMPADDEA EAEIAFKSVI PCLGDDFGIK DTQSQLFPGL SLVQWMAIQQ  420
NSRLSSSTSQ PTYIPSMEAS IPSSLICNDP ARLLSFQSHT SCFPNFQYGF KLNPQSQQLD  480
QHQKPKKQNS NEIQFPPPQQ LAESQTHLKQ RKHDNQQQNL QQLNAQKQQN LTQALLLNEQ  540
LQPSAFQIQQ QQVIQNQKSH SIQGKTLLNQ TYLQPQVLLQ SNSNFQQPVE LQQHSLLQQQ  600
QQIEMQLIQK LQHQQVLSQL SAQVQSQLSQ QLPLQNQLFH QQQNFQQLPK NQIAGHSNPQ  660
LLARTPPPPS ENDAPSCSTS PSSSCQVSMH GVPSKVLQEL QNRHEMHVIK ETNHILCHNS  720
MRDQLDSSSM NSFCLDGSLQ EGFSHSPVCL DADLRHDSHS NLLTGTNSDI LLQNSMLSRG  780
LGSGKDIQNF LPSYCNQRDV DTDSTAAVSS QSFCLQDMPF NPGWSADACF NEVGMLNQEM  840
WANQPQRRRT YTKVHKRGSV GRSIDVSRYR GYDELRHDLA CMFGIEGQLE DPHRTDWKVV  900
YVDHENDILL VGDDPWEEFV RCVQSIKILS SLEVQQMSLA GDLPNVVMHN QSRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein