PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020687939.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARF
Protein Properties Length: 959aa    MW: 108061 Da    PI: 6.7699
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020687939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.15.3e-21127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++       +++++ ++l  +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_020687939.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfTLQPPT-QELGANDLHDIVWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 218
                     99*****************************9666665.49************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_020687939.1 219 SQLLLGIRRA 228
                     7789999997 PP
2Auxin_resp113.42.1e-37253334182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     aaha++++s+F+++YnPras+seFv++++k++k+++++vs+GmRf+m+fete++  rr++Gt++g+sdld ++W+ S+Wr++
  XP_020687939.1 253 AAHAVANSSPFTIFYNPRASPSEFVIPLAKYNKTFYMQVSLGMRFRMMFETEECGVRRYMGTITGISDLDATQWKTSQWRNI 334
                     79******************************************************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 959 aa     Download sequence    
MKVPPANGFP ANTSEGERKS MNSELWHACA GPLVSLPPAG SHVVYFPQGH SEQVAASMQK  60
KMDGIPTYPS LPSKLICVLQ NVTLHADTET DEVYAQMTLQ PVNKFDREAL LASEMGLEQN  120
KQPTQFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTL QPPTQELGAN DLHDIVWTFR  180
HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDEKSQ LLLGIRRATR QQPTISSSVL  240
SSDSMHIGIL AAAAHAVANS SPFTIFYNPR ASPSEFVIPL AKYNKTFYMQ VSLGMRFRMM  300
FETEECGVRR YMGTITGISD LDATQWKTSQ WRNIEVGWDE LTAADRPSRV SLWEIEPVAT  360
PVYLSPPPFF RPKFPKQPGM PDDEAEAEIA FKSVIPCLGD DFGIKDTQSQ LFPGLSLVQW  420
MAIQQNSRLS SSTSQPTYIP SMEASIPSSL ICNDPARLLS FQSHTSCFPN FQYGFKLNPQ  480
SQQLDQHQKP KKQNSNEIQF PPPQQLAESQ THLKQRKHDN QQQNLQQLNA QKQQNLTQAL  540
LLNEQLQPSA FQIQQQQVIQ NQKSHSIQGK TLLNQTYLQP QVLLQSNSNF QQPVELQQHS  600
LLQQQQQIEM QLIQKLQHQQ VLSQLSAQVQ SQLSQQLPLQ NQLFHQQQNF QQLPKNQIAG  660
HSNPQLLART PPPPSENDAP SCSTSPSSSC QVSMHGVPSK VLQELQNRHE MHVIKETNHI  720
LCHNSMRDQL DSSSMNSFCL DGSLQEGFSH SPVCLDADLR HDSHSNLLTG TNSDILLQNS  780
MLSRGLGSGK DIQNFLPSYC NQRDVDTDST AAVSSQSFCL QDMPFNPGWS ADACFNEVGM  840
LNQEMWANQP QRRRTYTKVH KRGSVGRSID VSRYRGYDEL RHDLACMFGI EGQLEDPHRT  900
DWKVVYVDHE NDILLVGDDP WEEFVRCVQS IKILSSLEVQ QMSLAGDLPN VVMHNQSRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein