PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687899.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 839aa MW: 95747.3 Da PI: 8.0135

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687899.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.6	3.2e-16	73	157	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY++YA++vGF v++++s+ + ++g + +++C k g +++ + k r+r++ t+C a+++vk++ dg +++ +l+HnH+++ XP_020687899.1 73 KFYKAYARRVGFGVSVRRSSFT-KEGLCLYLELMCCKGGGNKRAEPK----FRKRTSATTNCLARIRVKLWADGLLHLELANLDHNHPVS 157 6**************99998.667799999999999988886554....8999******************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 839 aa Download sequence
MEGSSVPMKK SRRNRIVRRD LNSQEISGET AMASGEMEEV EEDEIDIDNS NDYGYEGVPE 60 VGMVFKTHQD VSKFYKAYAR RVGFGVSVRR SSFTKEGLCL YLELMCCKGG GNKRAEPKFR 120 KRTSATTNCL ARIRVKLWAD GLLHLELANL DHNHPVSPSM ARFLNCNRHL SGSAKKRARI 180 DECDAAQIGE EQVQEPANGL GALEDLLFGE SDCKSFVERA RLKLGEGDAE AIRLFFTRMQ 240 AKNSNFYNVI DLDEVGCVRN VFWADARSRA AYQYYNDVVS LDTTYVSNKY DMPLSTFVGV 300 NHHGQSVLLG CALLSDESTE TYIWLLKAWI ACMSGQLPKA LISDHCKSIQ IAVSEVLPRV 360 RHRLCLWQIM KKASEKLGGL TEYRAIHKAM QKAVYDSLSV EEFEMEWGKM IEIYGLREND 420 WMSSLDEGRH SWAPVYLKDT FWAGLSITQR NESLTAFFDG YVDAKTSLKQ FVGKYELALQ 480 SKYEKEAQSD FETFHKRRPS VSKFYMEEQL STVYTLDMFK KFQDEIEAIM YCHVSVIKVE 540 ESISTFDVKE CIFLEDGKRT MNKNHGVLYN SEDKDVQCIC GSFQFTGILC RHALSVFKLQ 600 QVHEIPSQYV LDRWKKDFKR LHVLNRFSED VVSSNRIGRY DYLSMRCLQL VEVGVLSDKY 660 QLALKLIREM EKFLLSDSTH EGTQPKIIAR VNKPSKPDNV SIEYIGCATL LDKGIEGRRR 720 RGRASQVNES QEQVSSNILP HGSQYVLQMP PQQFIDNQTA IRPSIVYMFP GGFNPHALGN 780 GTMMPWMYHQ MYQPKDPSGF GTAQAIRKRK VSRRLKTTQG GENPHCPPPH LCHRTASAL

Sequence ? help Back to Top

Protein Sequence Length: 839 aa Download sequence

MEGSSVPMKK SRRNRIVRRD LNSQEISGET AMASGEMEEV EEDEIDIDNS NDYGYEGVPE  60
VGMVFKTHQD VSKFYKAYAR RVGFGVSVRR SSFTKEGLCL YLELMCCKGG GNKRAEPKFR  120
KRTSATTNCL ARIRVKLWAD GLLHLELANL DHNHPVSPSM ARFLNCNRHL SGSAKKRARI  180
DECDAAQIGE EQVQEPANGL GALEDLLFGE SDCKSFVERA RLKLGEGDAE AIRLFFTRMQ  240
AKNSNFYNVI DLDEVGCVRN VFWADARSRA AYQYYNDVVS LDTTYVSNKY DMPLSTFVGV  300
NHHGQSVLLG CALLSDESTE TYIWLLKAWI ACMSGQLPKA LISDHCKSIQ IAVSEVLPRV  360
RHRLCLWQIM KKASEKLGGL TEYRAIHKAM QKAVYDSLSV EEFEMEWGKM IEIYGLREND  420
WMSSLDEGRH SWAPVYLKDT FWAGLSITQR NESLTAFFDG YVDAKTSLKQ FVGKYELALQ  480
SKYEKEAQSD FETFHKRRPS VSKFYMEEQL STVYTLDMFK KFQDEIEAIM YCHVSVIKVE  540
ESISTFDVKE CIFLEDGKRT MNKNHGVLYN SEDKDVQCIC GSFQFTGILC RHALSVFKLQ  600
QVHEIPSQYV LDRWKKDFKR LHVLNRFSED VVSSNRIGRY DYLSMRCLQL VEVGVLSDKY  660
QLALKLIREM EKFLLSDSTH EGTQPKIIAR VNKPSKPDNV SIEYIGCATL LDKGIEGRRR  720
RGRASQVNES QEQVSSNILP HGSQYVLQMP PQQFIDNQTA IRPSIVYMFP GGFNPHALGN  780
GTMMPWMYHQ MYQPKDPSGF GTAQAIRKRK VSRRLKTTQG GENPHCPPPH LCHRTASAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-139	FAR1 family protein