PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020687414.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | GATA | ||||||||
Protein Properties | Length: 243aa MW: 27775.5 Da PI: 9.434 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.6 | 6.3e-17 | 172 | 206 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C + Tp+WR gp g+ktLCnaCG+++++ +l XP_020687414.1 172 CSHCLSHRTPQWRAGPLGPKTLCNACGVRFKSGRL 206 *******************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MVVYRNTVVC GDIPAEFQPE KVPSSSNTMW EDFFPGQNKE EDEENDSLQW LSIYVEDCLS 60 GNTSFTSPPS PTHSNTIKIS QNPKQTQKLS SSFENFSLSV PAKARTKRRK TKDDFNFLNY 120 SKESPLLHQK HWLAESELLI IPKMEKLDKL QEHAEKGIGN GRELQQLQPR RCSHCLSHRT 180 PQWRAGPLGP KTLCNACGVR FKSGRLHPEY RPAKSPTFVS YMHSNSHKKV MEMRMVGLSS 240 HSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 5e-35 | GATA family protein |