PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020686820.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 435aa MW: 50161.7 Da PI: 7.1457

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020686820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.4	7.9e-23	118	214	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+ +v++Li+a+++++e+ +++ +kk++W+ +sk+++ergf +sp+qC++k+++lnkryk+++++ +++ +++++++ +++d XP_020686820.1 118 KWTDLMVRLLITAVSYLGEDTLSDCnssgrrkativQKKGKWKLISKVLAERGFYVSPQQCEDKFNDLNKRYKRLTDILGRGtSCKVVENPALLD 212 7************999999887777788889999********************************************5699999998888 PP trihelix 84 ql 85 + XP_020686820.1 213 LM 214 77 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MVPGASYGVI DLQGSMHLHH HQNPNAPFHH HLQQASHCQR QSLMMHPPMH EVFPTQINHL 60 KDCDQQLVHP MMDYDKKGEC CKNSASDDDE LSLNTDERVF CQNEAGKGKK GSPWHRMKWT 120 DLMVRLLITA VSYLGEDTLS DCNSSGRRKA TIVQKKGKWK LISKVLAERG FYVSPQQCED 180 KFNDLNKRYK RLTDILGRGT SCKVVENPAL LDLMSHIPDK AKDDVRKILS SKHLFYEEMC 240 SYHNGNRLNL PANPALQRSL QLAIMSKDDH DTKKAVHEDL DEDDQGDSED GEEDAEDNRM 300 LHRDSGGSCF HKRLKHGMDH EEMSFPNSLG SQDFNRRNDS ISVSTETSHV LPEGPKAALV 360 QMEMLRSRSI QLEEQSLHIQ SQILELEQQR LKWQRFSKKK DKELDKMRLK NERIKLENER 420 LTLDLKQKQL ERGVN

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MVPGASYGVI DLQGSMHLHH HQNPNAPFHH HLQQASHCQR QSLMMHPPMH EVFPTQINHL  60
KDCDQQLVHP MMDYDKKGEC CKNSASDDDE LSLNTDERVF CQNEAGKGKK GSPWHRMKWT  120
DLMVRLLITA VSYLGEDTLS DCNSSGRRKA TIVQKKGKWK LISKVLAERG FYVSPQQCED  180
KFNDLNKRYK RLTDILGRGT SCKVVENPAL LDLMSHIPDK AKDDVRKILS SKHLFYEEMC  240
SYHNGNRLNL PANPALQRSL QLAIMSKDDH DTKKAVHEDL DEDDQGDSED GEEDAEDNRM  300
LHRDSGGSCF HKRLKHGMDH EEMSFPNSLG SQDFNRRNDS ISVSTETSHV LPEGPKAALV  360
QMEMLRSRSI QLEEQSLHIQ SQILELEQQR LKWQRFSKKK DKELDKMRLK NERIKLENER  420
LTLDLKQKQL ERGVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-128	Trihelix family protein