PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020686353.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 387aa MW: 43323.5 Da PI: 5.4182

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020686353.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.4e-06	110	129	7	26
SGGGGTS--TTTTT-SS-SS CS zf-CCCH 7 rffartGtCkyGdrCkFaHg 26 +f++ G C++G++C+++H+ XP_020686353.1 110 KFYSMPGGCRFGETCRYSHS 129 79*****************7 PP
2	zf-CCCH	32.4	1.6e-10	150	175	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++++rtG+Cky ++CkF+H++ XP_020686353.1 150 GERVCSYYMRTGICKYHSSCKFHHPE 175 6899********************96 PP
3	zf-CCCH	37.8	3.2e-12	335	360	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++r+G+CkyG+ CkF H++ XP_020686353.1 335 DHPVCIYYSRFGICKYGPACKFDHPM 360 6799********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MGLYEEPDSN LESQLGFESP SFFAAAEKDI NHGIDALKLE GNSRMGLPAA GDADVDLGEG 60 VKYPIRLSEP DCAFYLRTGC CKFGFCCRFN HPREKRVVQG WNRISTKEFK FYSMPGGCRF 120 GETCRYSHSN EIAESVPVEL NSLGLPVRKG ERVCSYYMRT GICKYHSSCK FHHPELSDID 180 GLHVFECHSA SSLQNTIWPS PMPVESPTLL TASNNSSLNL DISQPCMPAM SSEWLNLYKD 240 QVRSQDSSLP SLSKKTNSHP SAVDQNGFSK LEDSPMQQKE VVDNSKESGE SQSQNGIRYE 300 AFRLAFPWWQ SHSKDHLPEF EGCLLSPIGL PQRPDHPVCI YYSRFGICKY GPACKFDHPM 360 DENTDQSVTM SAEDKMEGEV SLVSQTT

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MGLYEEPDSN LESQLGFESP SFFAAAEKDI NHGIDALKLE GNSRMGLPAA GDADVDLGEG  60
VKYPIRLSEP DCAFYLRTGC CKFGFCCRFN HPREKRVVQG WNRISTKEFK FYSMPGGCRF  120
GETCRYSHSN EIAESVPVEL NSLGLPVRKG ERVCSYYMRT GICKYHSSCK FHHPELSDID  180
GLHVFECHSA SSLQNTIWPS PMPVESPTLL TASNNSSLNL DISQPCMPAM SSEWLNLYKD  240
QVRSQDSSLP SLSKKTNSHP SAVDQNGFSK LEDSPMQQKE VVDNSKESGE SQSQNGIRYE  300
AFRLAFPWWQ SHSKDHLPEF EGCLLSPIGL PQRPDHPVCI YYSRFGICKY GPACKFDHPM  360
DENTDQSVTM SAEDKMEGEV SLVSQTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-47	C3H family protein