PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020685711.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 498aa    MW: 54224.3 Da    PI: 4.8616
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020685711.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS372.45.9e-1141294711373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgd..pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     lv+lL++cA+ ++ +d+  a++l+ +++ l    g+   + ++aayf  AL +rl +         +ps+ +     e    +++f+e sP+l+f
  XP_020685711.1 129 LVHLLMSCADSIHRDDHPSASNLIHEMQILLPRVGTafGIGKVAAYFIDALDRRLRS---------RPSPPA-----EDEILYHYFYESSPYLRF 209
                     68****************************98888734689***************9.........555554.....44457799********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +hltaNqaIle+++g +rvH+iD+++++GlQWpaL+qaLa Rp+gpp +R+Tg+g+       ++ e+g+rLa+fA++++vpf+f++     l++
  XP_020685711.1 210 AHLTANQAILESFNGFDRVHVIDLNLKHGLQWPALIQALALRPGGPPFIRLTGFGP------PAICEVGRRLADFARSVNVPFSFTL-----LDE 293
                     ********************************************************......77**********************9.....5** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++++ Lrv+pgE++aVn+vlqlh++l++++s    +d+vL+ vk l+P++v+vveqeadhn++ Fl+rf+eal yys++fdsle+       ++ 
  XP_020685711.1 294 IQPNLLRVEPGETVAVNSVLQLHQFLSDPGSPGP-IDSVLSWVKALRPRIVTVVEQEADHNRPGFLDRFTEALFYYSTVFDSLESA------AAG 381
                     **************************87777666.************************************************999......466 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                        +++l++ei+n+v+c g+er+erhe l++Wr+r+++aG+ pvp +++a  qa++ll  ++++gy++ee +g+l+l W++r+++s+SaW
  XP_020685711.1 382 AGPEVYLQKEICNIVCCDGEERVERHEPLASWRARFGRAGLWPVPHGSSAFRQASMLLTLFPGEGYSIEEVEGCLTLSWHGRAVISASAW 471
                     667889************************************************************************************ PP
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    
MDESSYGQES SANKSISTSP EIDGLLAGVG YAIRPSDLPH VAERLEKLDS AIIAAAAAGL  60
PPEFLCSDAV HYNPSDLAAW VDSMSMLTSL SSPPTHPATA PWPVQIYAPA PLSTPTVDLL  120
APEDAGINLV HLLMSCADSI HRDDHPSASN LIHEMQILLP RVGTAFGIGK VAAYFIDALD  180
RRLRSRPSPP AEDEILYHYF YESSPYLRFA HLTANQAILE SFNGFDRVHV IDLNLKHGLQ  240
WPALIQALAL RPGGPPFIRL TGFGPPAICE VGRRLADFAR SVNVPFSFTL LDEIQPNLLR  300
VEPGETVAVN SVLQLHQFLS DPGSPGPIDS VLSWVKALRP RIVTVVEQEA DHNRPGFLDR  360
FTEALFYYST VFDSLESAAA GAGPEVYLQK EICNIVCCDG EERVERHEPL ASWRARFGRA  420
GLWPVPHGSS AFRQASMLLT LFPGEGYSIE EVEGCLTLSW HGRAVISASA WHCGDGVDAP  480
PLAGNIFFNG YSGSDRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-118GRAS family protein