PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020685710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | NF-YC | ||||||||
Protein Properties | Length: 258aa MW: 29610.2 Da PI: 6.5197 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 58 | 2.1e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rik+i+++dedv +i+ +P l+ska elf+ +l r+++ + + +t+ s ++++v + +fdfl ++v r XP_020685710.1 6 DTRFPASRIKRIMQTDEDVGKIALAVPLLVSKALELFLQDLCDRTYNVTLKRGAKTMCSSHLKQCVHNFSVFDFLKETVNR 86 5789************************************************************************99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
MRKKLDTRFP ASRIKRIMQT DEDVGKIALA VPLLVSKALE LFLQDLCDRT YNVTLKRGAK 60 TMCSSHLKQC VHNFSVFDFL KETVNRVPDV GCSVVVGEDR SSKRRKAVDD ESNVIDEESK 120 RSKREPVHDS RGRGRGRGRG RGRGRRRGSH ETEWDFSHYN KYEGGPETSP QHHHKLEQGE 180 NDFNKTELKE IDMTGTPVPV RDFDLNIDLD ENGLAMTNPV LAWPPFTYIN KVTIDPLQLA 240 LIDKRIDEEE DYDNEDDI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 140 | RGRGRGRGRG |
2 | 131 | 141 | RGRGRGRGRGR |
3 | 133 | 142 | RGRGRGRGRG |
4 | 133 | 143 | RGRGRGRGRGR |
5 | 135 | 144 | RGRGRGRGRG |
6 | 135 | 145 | RGRGRGRGRGR |
7 | 137 | 147 | RGRGRGRGRGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 2e-56 | NF-YC family protein |