PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020685662.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family BBR-BPC
Protein Properties Length: 291aa    MW: 32748.5 Da    PI: 10.1719
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020685662.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind295.71.8e-9012911301
       GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84 
                     mdd+ ++e  r+k+ +y+        p++++k+  +l+lm++++erd++i+e n+a+sek+aa+aerdma ++rd a+aern+a++erdn+l+al
  XP_020685662.1   1 MDDNVHKEnvRHKTdHYKsvhaqwmmPQHQMKDSPALKLMTLLTERDNAIQELNIAISEKRAALAERDMAIVHRDGAIAERNAAIMERDNALAAL 95 
                     88888877799999999999999999778****************************************************************** PP

       GAGA_bind  85 llvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
                      ++++++ + +  gv +++  + +             ++++++ +   +a +      +ak+++k+kk q +k  k++k+ +    +e+ +k+  
  XP_020685662.1  96 DYARQNSLNGH--GVPASPPQHLT-------------EPYPMPTTASDDAIK--G--RKAKRSRKEKKDQAKKASKTPKKGRIGG-GEDLNKQI- 169
                     **998744333..33333333222.............344444333223332..2..3344444444455556666666666655.33333333. PP

       GAGA_bind 180 kesaderskaekksidlvlngvslDestlP.vPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273
                      +  + +  + +k +dl+ln+v +Des +  +P CsCtG+l+ CYkWG+GGWqSaCCt t+S+yPLPv++++r+aR+agrKmS++af klL +La
  XP_020685662.1 170 -SDFKYQEWKVWKVQDLGLNQVPFDESIMQrPPGCSCTGKLQHCYKWGSGGWQSACCTKTLSMYPLPVMPNKRHARVAGRKMSGSAFVKLLTRLA 263
                     .3333567889******************73579************************************************************* PP

       GAGA_bind 274 aeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     aeGydls p+DLkdhWAkHGtn+++ti+
  XP_020685662.1 264 AEGYDLSAPLDLKDHWAKHGTNRYITIK 291
                     ***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MDDNVHKENV RHKTDHYKSV HAQWMMPQHQ MKDSPALKLM TLLTERDNAI QELNIAISEK  60
RAALAERDMA IVHRDGAIAE RNAAIMERDN ALAALDYARQ NSLNGHGVPA SPPQHLTEPY  120
PMPTTASDDA IKGRKAKRSR KEKKDQAKKA SKTPKKGRIG GGEDLNKQIS DFKYQEWKVW  180
KVQDLGLNQV PFDESIMQRP PGCSCTGKLQ HCYKWGSGGW QSACCTKTLS MYPLPVMPNK  240
RHARVAGRKM SGSAFVKLLT RLAAEGYDLS APLDLKDHWA KHGTNRYITI K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.12e-86BBR-BPC family protein