PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020684210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 203aa MW: 23355.3 Da PI: 8.333 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.9 | 5.6e-19 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd++l +++ ++G g+W++ a++ g++Rt+k+c++rw++yl XP_020684210.1 16 RGPWTVEEDLILTNYISKHGEGRWNSLAKCAGLKRTGKSCRLRWLNYL 63 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_020684210.1 69 RGNITAEEQFLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 112 7999******************.*********.***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence |
METGKQKSSV EEELRRGPWT VEEDLILTNY ISKHGEGRWN SLAKCAGLKR TGKSCRLRWL 60 NYLRPDVRRG NITAEEQFLI LELHSRWGNR WSKIAQHLPG RTDNEIKNYW RTRVQKHANQ 120 QWMPRLLERI RTAVDSSRAI SNAHTTLTSS NDNSKFSLPP VPGCCNDVVE EEGWPEFPTP 180 SDEGSMLAGL WELSAMGSNM YVE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G48000.1 | 3e-69 | MYB family protein |