PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020683869.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 739aa MW: 83094.9 Da PI: 9.7939

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020683869.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	223	243	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+ff++ G C++G++C+F H XP_020683869.2 223 VPCKFFLE-GRCRHGENCRFFH 243 69****.*********77 PP

Sequence ? help Back to Top
Protein Sequence Length: 739 aa Download sequence
MRDRERVRER VRNRRVRKRI CVEKRPKALK RSRSFSQDSR STSPSNASKR GCESWVEKCS 60 TRPAAAACRD FAAGRCRHGS ECIYLHEDGG SRQIERHHDS ASPDERESRF ERGRHQGCVS 120 RESLTDSTQK INYSREKSFR RHDDHFDDKR DNNEQRKHYM SNETCFDFTR NRCHRGASCR 180 YIHHETSIDG ERKVRDELSG RVHNTRDGRT SFGHLEPQRV SSVPCKFFLE GRCRHGENCR 240 FFHQVGPLSN AEDRLHPCGR KDADFANNIL PIPSAGQNFQ QSGQSQIALQ VMHAQKFASN 300 SPSQQFVPLL PLNGKMLQVI NQSGQNPVTS LHEPSGAHHF IANMQNRSTH PPESNPQKFE 360 YGRQAQAGLL VQSHVGNQQN PIVNERIQQN HPLPHNGQSE PRFTVSGQIL QNLPSQVGHS 420 RQDIIVTGDT RQILPQNVQI QQHSFPSLVS NGQIHLVAPK PPLNPEKISS DEKDRQLTSE 480 NNLNAQALQQ SKQIASGKPL QEADLSEIKS SVFNSDNLIT HKFVTTEQAA KITDLSASLV 540 QFFGTAALNS QTRTGILPPA DVSPGSLVTV VAPLLTEIQG SITNLNHSAP SALTVLEKSH 600 KQIRTMEQIQ EGGDASAKEA ENFEKLHNKE ELSAPLQNGD PEVRRDGDAK RSKENKGFRM 660 FKCALVELVK DMLKPTWKEG QLSKEAHNTI VKKVVDKVTG SVQGHNAPQT QEKIDLYISN 720 SKAKLSKLVQ AYVEKYVGR

Sequence ? help Back to Top

Protein Sequence Length: 739 aa Download sequence

MRDRERVRER VRNRRVRKRI CVEKRPKALK RSRSFSQDSR STSPSNASKR GCESWVEKCS  60
TRPAAAACRD FAAGRCRHGS ECIYLHEDGG SRQIERHHDS ASPDERESRF ERGRHQGCVS  120
RESLTDSTQK INYSREKSFR RHDDHFDDKR DNNEQRKHYM SNETCFDFTR NRCHRGASCR  180
YIHHETSIDG ERKVRDELSG RVHNTRDGRT SFGHLEPQRV SSVPCKFFLE GRCRHGENCR  240
FFHQVGPLSN AEDRLHPCGR KDADFANNIL PIPSAGQNFQ QSGQSQIALQ VMHAQKFASN  300
SPSQQFVPLL PLNGKMLQVI NQSGQNPVTS LHEPSGAHHF IANMQNRSTH PPESNPQKFE  360
YGRQAQAGLL VQSHVGNQQN PIVNERIQQN HPLPHNGQSE PRFTVSGQIL QNLPSQVGHS  420
RQDIIVTGDT RQILPQNVQI QQHSFPSLVS NGQIHLVAPK PPLNPEKISS DEKDRQLTSE  480
NNLNAQALQQ SKQIASGKPL QEADLSEIKS SVFNSDNLIT HKFVTTEQAA KITDLSASLV  540
QFFGTAALNS QTRTGILPPA DVSPGSLVTV VAPLLTEIQG SITNLNHSAP SALTVLEKSH  600
KQIRTMEQIQ EGGDASAKEA ENFEKLHNKE ELSAPLQNGD PEVRRDGDAK RSKENKGFRM  660
FKCALVELVK DMLKPTWKEG QLSKEAHNTI VKKVVDKVTG SVQGHNAPQT QEKIDLYISN  720
SKAKLSKLVQ AYVEKYVGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	12	RDRERVRERVR
2	4	14	RDRERVRERVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-21	C3H family protein