PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020683055.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 327aa    MW: 36715.6 Da    PI: 7.6978
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020683055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.48.6e-12192217126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C +Gd CkF+H+
  XP_020683055.1 192 YQPDICKDYKETGYCGFGDACKFMHD 217
                     67789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MADQSGDVCS FFKKPSRNKN IRKRTATEST EGEDENGDQE PQTSLPSQRP NKTLASDKAL  60
HFSTATSSSK PSGKDDGEIE PKSEAGLFHF ESSKLIQVQN DSRATASLQT ETEFDRDARA  120
IRERVLKRAE ESLKGKSGSE VSNEKVYRGI HGYTDYKAGF RREQTVAGEK AGGAHGPLRA  180
SEHIRVSARF DYQPDICKDY KETGYCGFGD ACKFMHDRGD YKSGWQMEKD WDEREKARKR  240
RLAMGGGGED GDGGSDDEDD HDLPFACSIC RRPFDDPVVT KCKHYFCEHC ALKHHSKNKK  300
CFVCNTPTLG IFNTAQEIRK KMAQEKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-145C3H family protein