PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682664.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 349aa MW: 38300.6 Da PI: 6.6628

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.2	6.7e-09	105	129	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC++f+ GtC++ +C+FaH+ XP_020682664.1 105 FKTKLCCRFRS-GTCPFVTNCNFAHD 129 69*****99.***********7 PP
2	zf-CCCH	41.9	1.6e-13	237	262	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_020682664.1 237 WKTRICNKWEMTGHCPFGSKCHFAHG 262 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MDCGRWSGYA IELIPDGSVP VYSDPVLSPS CDQSIWATED DHRSLNGDSS LETILHRSQD 60 GRQQPSQPLS RSGSEQSPNK MPGGFSHGDA VFSNSNSKAI GRLFFKTKLC CRFRSGTCPF 120 VTNCNFAHDM VELRKPPPNW QEIVAALEVG EILEPNEEHH IPILTSAVVG DGHRSYKGRH 180 CKKFYTDEGC PYGDMCSFLH DEESKARESE AISLSPAVGG GGHGAGGNGS NQKPSNWKTR 240 ICNKWEMTGH CPFGSKCHFA HGTAELHRCG RGLVQIEANE ALPAAPDTMQ SFTSTKATTD 300 AVVADVYHMG VSSQRSTVSN PRQSQRPIQK WKGPYNISRI YGDWIDDID

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MDCGRWSGYA IELIPDGSVP VYSDPVLSPS CDQSIWATED DHRSLNGDSS LETILHRSQD  60
GRQQPSQPLS RSGSEQSPNK MPGGFSHGDA VFSNSNSKAI GRLFFKTKLC CRFRSGTCPF  120
VTNCNFAHDM VELRKPPPNW QEIVAALEVG EILEPNEEHH IPILTSAVVG DGHRSYKGRH  180
CKKFYTDEGC PYGDMCSFLH DEESKARESE AISLSPAVGG GGHGAGGNGS NQKPSNWKTR  240
ICNKWEMTGH CPFGSKCHFA HGTAELHRCG RGLVQIEANE ALPAAPDTMQ SFTSTKATTD  300
AVVADVYHMG VSSQRSTVSN PRQSQRPIQK WKGPYNISRI YGDWIDDID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	7e-96	C3H family protein