PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020682531.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 532aa    MW: 59109.7 Da    PI: 5.8522
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020682531.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.31.2e-921265313374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshl 96 
                     +lLl+cA+av+s+d +++q+l++ l+elasp+gd  q+la+yf++AL arl++s++++ ++l++ ++++ + +++     l f+e+sP+  f+h+
  XP_020682531.2 126 DLLLDCARAVASRDSSRVQQLMWMLNELASPYGDFDQKLASYFLQALFARLTSSGPRTLRTLSSASDRTASFDSTRRT-ALrFQELSPWSSFGHV 219
                     79************************************************************9988885554333333.335************* PP

            GRAS  97 taNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvl 181
                     +aN aIle++  +      +r+Hi+D++ + ++QWp+Ll+aLa+R+   e++p+l iT+v++++s   ++ ++e++ r++kfA+ + vpf+f+v+
  XP_020682531.2 220 AANGAILESFLLHspssspSRLHILDLSTTFCTQWPTLLEALATRSaadEDTPHLSITTVVPSTSPtARRVMREIATRMEKFARLMAVPFRFSVV 314
                     *********97666677789**************************98889*********9977667999************************9 PP

            GRAS 182 vak..rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.....nsesFlerflealeyysa 266
                     ++   +l++l+l++L  +      alaVn+v +lh +     +++ +rd +L  +++l+P++v+vve+ea++     ++e Fl++f e l+++sa
  XP_020682531.2 315 HHPdaDLSALDLDTLISSDssaATALAVNFVNSLHGVS----PSARHRDVLLGKIRRLRPRIVTVVEEEAELdfdedDEEGFLKGFREGLRFFSA 405
                     554368899999999444456699*************8....555569*********************766321134569************** PP

            GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee....... 354
                      fdsle+++p++s+er  +Er+  gr+ v++vac  +++ er+ t++ W++r++ aGF+p+++s++ +++ ++llr++k +g+++          
  XP_020682531.2 406 YFDSLEESFPKTSNERLALERA-AGRAMVDLVACPASQSAERRDTAAGWSRRMRIAGFSPLAFSDDLTDDLRALLRRYK-EGWSMRAAvapdead 498
                     **********************.********************************************************.666666333345567 PP

            GRAS 355 ............sgslv.lgWkdrpLvsvSaWr 374
                                  g+ + l+W+++p+v++SaW+
  XP_020682531.2 499 estssgggrgggAGCGMfLTWREEPVVWASAWK 531
                     789999999999777766**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    
MDTLFRLVSL QSSDEQNQHQ QSSLNSSRTS SSSRSSRHAH HHQYLPSTAY FEVSQEEECG  60
FINPHQPSYF YNNNNSNLFM DEDFSSSSSS SKHFQHSDQP PAAAPPPPDF PLPDLFSDPN  120
RRWASDLLLD CARAVASRDS SRVQQLMWML NELASPYGDF DQKLASYFLQ ALFARLTSSG  180
PRTLRTLSSA SDRTASFDST RRTALRFQEL SPWSSFGHVA ANGAILESFL LHSPSSSPSR  240
LHILDLSTTF CTQWPTLLEA LATRSAADED TPHLSITTVV PSTSPTARRV MREIATRMEK  300
FARLMAVPFR FSVVHHPDAD LSALDLDTLI SSDSSAATAL AVNFVNSLHG VSPSARHRDV  360
LLGKIRRLRP RIVTVVEEEA ELDFDEDDEE GFLKGFREGL RFFSAYFDSL EESFPKTSNE  420
RLALERAAGR AMVDLVACPA SQSAERRDTA AGWSRRMRIA GFSPLAFSDD LTDDLRALLR  480
RYKEGWSMRA AVAPDEADES TSSGGGRGGG AGCGMFLTWR EEPVVWASAW KV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-116GRAS family protein