PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020681728.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 331aa MW: 36659.3 Da PI: 6.0101

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020681728.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT eEd +l +++q+G+++W+++++ g+ R++k+c++rw +yl XP_020681728.1 14 RGQWTMEEDNKLSSYIAQHGTRNWRLVPKNAGLQRCGKSCRLRWTNYL 61 89********************************************97 PP
2	Myb_DNA-binding	46.7	7.4e-15	68	110	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++ E++ +v+++ G++ W++Ia+ ++ gRt++++k++w++ XP_020681728.1 68 GEFSETEEQTIVKLHSVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 110 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MGRIPCCEKD NVKRGQWTME EDNKLSSYIA QHGTRNWRLV PKNAGLQRCG KSCRLRWTNY 60 LRPDLKHGEF SETEEQTIVK LHSVVGNRWS LIAAQLPGRT DNDVKNHWNT KLKKKLSGMG 120 IDPVTHKPFS HLMAEIATTL APPQVAHLAE AALGCFKDEM LHLLTKKRID FSSGYSVGGY 180 PSTTVPPPQP SVEPTLVEEF NGEETIQKIK MGLSRAIMRE PSPVKGWGTM TNGEPDDNSL 240 LCEMYPMTID QGYRYGNPSV YANDGEGSTW STCTGGGGGS GAVEENHLLK GKEDESEEYE 300 SVKGGNKEDA GVFGSECVLW DLSDDLMNHI V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56110.1	1e-117	MYB family protein