PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020681245.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 287aa MW: 31516.1 Da PI: 8.2205

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020681245.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	259	281	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F+++ +L+ H + H XP_020681245.1 259 VCPRCSKAFRDPVLLVEHVEKdH 281 7*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MGTPAFPNLG KHCSVEDCKL IDFLPFTCDC CDKVFCLQHR SYAKHLCPNA NQMDVTVLVC 60 PLCAQGVRLV PNEDPNITWD LHVNGDCDPS NYQKVTKKKR CPAPGCREIL VFSNTIRCKD 120 CTQEHCLRHR FGPDHNCLGP RKPDTGFPFI GVLRSQKGNS TPNQTSNGSS KWSLGLLNAA 180 SSIRASAEAS MQRLAIATNQ ALHKAKDGMA QGSGANGDLV ESCIHCHARF ANVTSLIEHV 240 EKVHESKVKQ APNRVIVDVC PRCSKAFRDP VLLVEHVEKD HGGFSKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-106	C2H2 family protein