PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020680996.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 516aa    MW: 56469.2 Da    PI: 4.8135
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020680996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.16.5e-931265011373
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                     lv+lL+++Aea++  +++  la+ +Larl+el ++ g ++m+Rla +ft AL++ l +        +   e+++ ns e+l a++l++++sP++k
  XP_020680996.1 126 LVHLLMAAAEALTGANKSsdLARVILARLRELLAEGGaTNMERLAEHFTDALQRLLDG--------VGRHEDQPPNSGEVLEAFQLLQDMSPYVK 212
                     68**********997766669***********8888889****************999........445555556799***************** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                     f+h+taNqaIle+v ge+rvHi+D+di++G+QW++L+qa+ s++      +pp+lRiT+v +   +  s +++  tg+rLa fA+++g++f+f  
  XP_020680996.1 213 FGHFTANQAILESVVGERRVHIVDYDIMEGVQWASLMQAMVSQQetpslTPPPHLRITAVTRLGGSrrSGTTVLDTGRRLAAFAASVGLSFSFGQ 307
                     *****************************************99977777779**********76557899999********************** PP

            GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsl 271
                        ++ ++l++ + +v +gEa++ n++l+  +l+ +s+++     ++L +  +l +++v+vve+      + +s+ F+  f+e ++ ysa+ dsl
  XP_020680996.1 308 CRLDADDQLRPAAVKVVKGEAVVLNCALHPPHLPWRSAASIA---SFLGCAGELGARIVTVVEEAvvfgGSDGSGGFVGSFMEEMKRYSAMWDSL 399
                     99999****************************966666555...9******************94443344677******************** PP

            GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdr 365
                     ea++p + ++r +vE+ +lg+ i   v  + ++r+e  e+ e W e+l+eaGF+ + ls ++ +q +lll  ++ dgy+v+ee  + lvl+Wk+ 
  XP_020680996.1 400 EAGFPMQGKARGVVEKLILGPMIAGSVGRAYRRREESGEEREGWAEWLKEAGFQRIGLSFSNLCQSRLLLGLFN-DGYKVDEEgPNKLVLCWKNC 493
                     **************************************************************************.******88578999****** PP

            GRAS 366 pLvsvSaW 373
                     +L+s+S+W
  XP_020680996.1 494 RLLSASVW 501
                     ******** PP
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    
MMCVYIYAKE GQTLMQRKTE MEVVDMEYMM ELAFSGCSST SSTTGFGDLA WVDWSPAVDW  60
GHFSVENDFN GLLEHYGLPC TPAAQDWSTN VSPTSTNCPG TPVEEFQQQL PPPMEIERDN  120
DRGLRLVHLL MAAAEALTGA NKSSDLARVI LARLRELLAE GGATNMERLA EHFTDALQRL  180
LDGVGRHEDQ PPNSGEVLEA FQLLQDMSPY VKFGHFTANQ AILESVVGER RVHIVDYDIM  240
EGVQWASLMQ AMVSQQETPS LTPPPHLRIT AVTRLGGSRR SGTTVLDTGR RLAAFAASVG  300
LSFSFGQCRL DADDQLRPAA VKVVKGEAVV LNCALHPPHL PWRSAASIAS FLGCAGELGA  360
RIVTVVEEAV VFGGSDGSGG FVGSFMEEMK RYSAMWDSLE AGFPMQGKAR GVVEKLILGP  420
MIAGSVGRAY RRREESGEER EGWAEWLKEA GFQRIGLSFS NLCQSRLLLG LFNDGYKVDE  480
EGPNKLVLCW KNCRLLSASV WSAPATELPA ASCFSW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-110GRAS family protein