PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020680969.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 244aa    MW: 27837.5 Da    PI: 8.5545
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020680969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-07134153626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C++f++ G Ck Gd C +aHg
  XP_020680969.1 134 CPDFRK-GNCKKGDACEYAHG 153
                     ******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MKVGHRTGCH PTVHVPPWTT VEESDVLVRP YPMPVSGIAF SGGDGELSPY TLRELTLFMK  60
HRFLPSNDSN SNESDLADPP LGSYSSDFFR MYEFKVKRCA RGRSHDWTEC PFAHPGEKAR  120
RRDPMKFQYS GTSCPDFRKG NCKKGDACEY AHGVFECWLH PTKYRTQSCK DGTACRRRVC  180
FFAHTPEQLR LTTSQQPSPK SDMDNMVSSI QNMQLGKRVE TKKEAVKDDG RVSPDFGWVW  240
DLVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.13e-77C3H family protein