PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020680574.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 186aa MW: 20761.3 Da PI: 9.3398 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.9 | 6.2e-20 | 8 | 53 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W+ eEd +l+++v+q+G+++W+ I ++++ gR++k+c++rw + XP_020680574.1 8 RGTWSSEEDAKLKELVEQHGPRNWSVICKEIP-GRSGKSCRLRWCNQ 53 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 50 | 6.7e-16 | 62 | 102 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T eE ++++a +++G++ W+tIar ++ gRt++ +k++w+ XP_020680574.1 62 PFTVEENNIIARAQERYGNK-WATIARLLP-GRTDNAIKNHWN 102 89******************.*********.***********9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence |
MDEDGVIRGT WSSEEDAKLK ELVEQHGPRN WSVICKEIPG RSGKSCRLRW CNQLSPDVEH 60 RPFTVEENNI IARAQERYGN KWATIARLLP GRTDNAIKNH WNCTLRRLKR TSASSLSDLE 120 VEVDEKKRAR GKNVMMEKDQ DPITILSLSL PGGGGGAGGG GLKGEEKKDS GDGFFGRSDR 180 EGRRKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 3e-53 | MYB family protein |