PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020680459.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 240aa MW: 27601.7 Da PI: 10.9707 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.6 | 6.6e-16 | 15 | 60 | 12 | 57 |
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ Le+ e ++++ e++ +LAkklgL+ rqV vWFqNrRa++kk XP_020680459.1 15 VQLLERSIEIENKLEPERKSDLAKKLGLQPRQVAVWFQNRRARWKK 60 57899999999**********************************8 PP | |||||||
2 | HD-ZIP_I/II | 112.6 | 2.5e-36 | 14 | 97 | 10 | 93 |
HD-ZIP_I/II 10 qvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 v+lLE+s e e+kLeperK++la++LglqprqvavWFqnrRAR+k+kqlE+d+++Lk++y+al +++++L k++++Lr+++++ XP_020680459.1 14 RVQLLERSIEIENKLEPERKSDLAKKLGLQPRQVAVWFQNRRARWKKKQLERDFDRLKSSYEALLADHDSLFKDNDRLRSQVRS 97 5899****************************************************************************9976 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence |
MHAGNLKITG SYFRVQLLER SIEIENKLEP ERKSDLAKKL GLQPRQVAVW FQNRRARWKK 60 KQLERDFDRL KSSYEALLAD HDSLFKDNDR LRSQVRSLSL TDDFTAAPPF FDAAPPFFKA 120 VGVKGKVVGD GNVGGKQQKA GVYFRTEKVA VGRKKFENGA RPRLFDIAPW TTFPSSRIGS 180 QNILVGSNDG SSLAVKIKFF PFVRFFVAIR LHSLDNVPFH SDWKLQHFDQ KQRRKFARCE |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 54 | 62 | RRARWKKKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-39 | HD-ZIP family protein |