PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020680404.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 283aa MW: 31491.9 Da PI: 8.3806

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020680404.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.4e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl XP_020680404.1 14 KGPWSPEEDAKLKSYIEQNGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	42.5	1.5e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++++eE+ ++ + + G++ W++Ia+ ++ gRt++++k++w++ XP_020680404.1 69 GAFSEEEENIICSLYIRIGSR-WSLIAAQLP-GRTDNDIKNYWNT 111 79*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MGRAPCCDKE NVKKGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKVGLKRC GKSCRLRWLN 60 YLRPNLKHGA FSEEEENIIC SLYIRIGSRW SLIAAQLPGR TDNDIKNYWN TKLKKKLLGK 120 FPRKDHHQNQ YTCRAPKQDP KNPHKILNSL EISNGDSPAG CWIEPTLPAY IPSSTEIKRL 180 LPKPEGTPLL ISPDHSLNGT NSHLLATSPQ PSSFTNCLSS SSAELDDIFG QFDSFYESTG 240 MSREIIELLS MPDQVINSLM YPLMEASTAV SYQGSIGVNG GLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	4e-80	MYB family protein