PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020680391.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 203aa MW: 23543.7 Da PI: 7.9755 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++lv +++++G +W+ ++ g+ R++k+c++rw +yl XP_020680391.1 21 RGAWTAAEDKKLVAYITMHGHTNWRNLPKQAGLLRCGKSCRLRWINYL 68 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 74 | 118 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE++ ++ ++ +lG++ W++Ia++++ gRt++++k+ w+++ XP_020680391.1 74 RGNFTKEEEDTIISLHSELGNK-WSKIASYLP-GRTDNEIKNLWHTH 118 89********************.*********.***********987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence |
MARKGERRGR QPCCEKEGLK RGAWTAAEDK KLVAYITMHG HTNWRNLPKQ AGLLRCGKSC 60 RLRWINYLRP DVKRGNFTKE EEDTIISLHS ELGNKWSKIA SYLPGRTDNE IKNLWHTHIK 120 KKIAQGEASS SSSSKQESYE IKPNQSIILH EYNSAEELSS SQMLWREELN GVMDFMMMPE 180 EDEGYYNGLV YLESEIDLWG QMN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23250.1 | 8e-67 | MYB family protein |