PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020680223.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 30676.3 Da PI: 6.0604 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.2 | 4.9e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+d++ +G g+W+ ++ + g+ R +k+c++rw +yl XP_020680223.1 15 KGLWSPEEDQRLKDYILNHGYGCWSEVPVKAGLERNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.4e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++l ++++ lG++ W+ Ia +++ gRt++++k++w++yl XP_020680223.1 68 RGKFSQEEEDLAMKLHAVLGNK-WSQIAMHLP-GRTDNEVKNYWNTYL 113 89********************.*********.*************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 272 aa Download sequence |
MGCRGSEKAK MKCKKGLWSP EEDQRLKDYI LNHGYGCWSE VPVKAGLERN GKSCRLRWIN 60 YLRPGIKRGK FSQEEEDLAM KLHAVLGNKW SQIAMHLPGR TDNEVKNYWN TYLKKKVKKS 120 EESASAKLSD HNPSTDSSAE NYKNKQENFN KILLFDTIEP AESSSYSHGF SQQKSWPKVM 180 FADWIFGENS DGLLSLESSD GGKGLAWDSC SFDSRETLSN GDLRAMSNQE FAEGGSYVSC 240 FEPVDLIGSD SFDLLSFGGN FGGFEMNQDL MF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52260.1 | 9e-53 | MYB family protein |