PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020680219.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 661aa MW: 73206.1 Da PI: 7.9373

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020680219.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00079	37	58	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rH r+H XP_020680219.1 37 KCDKCSREFCSSINYRRHRRVH 58 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MLLQKPPVIL KNVCQVSKSA NLPGWPLLSP SKIQLQKCDK CSREFCSSIN YRRHRRVHRR 60 SLNVDKDSQK NRDFLGTFWD KLSEDEAKEL VSLRNVTIEE VTGSSVTKAL STSFRRAGVL 120 SSLPQGYIKA GLTLLEIVQA SPSMLPMSSQ ELFSVLDEAS EKTFLCAGTA LSLQKYVFDG 180 EVVKKALEIK NIVACTSFLI EIELVKAWLV DKDAEALRCQ KLLVDEEEAA HRRKAELLER 240 KRLKKLRQKE QKQNEASNGE KNDFKGPSPD SPPDFMGSTE ASSSTRDSSE DCTSEASHIQ 300 EHQVDFAESS ATEDDGNAGK NISHNAQNDH QNLSDRGKSP NLASRADDPG RDVVHQTRGT 360 GHMQSNHLRQ VQSRLTQNNP SGFQAGQVST ARPLVNMRQN NSRDSKVINR PNGNKVWTIK 420 SRPDNDEDGK YGEEADRELT NQPSVSDRSE VQVLIGSINV SLGDDELQHH CTIMEPQRQE 480 KLVKPDSSLS SLGKTPVKLW KPVSRHGNGN LVQNDHDDVK QGVPAAKDAE RLLPGGSCLA 540 FEGLVSDFER CRGSIMFSTE AAKAFLVQRW KEAIAGDEVL IISSPDTEAS GNPNHIEGNF 600 VNIPSQSSDF HGRHILGRVE NRLAVAGVAA IDPALNGSLH FKFRPKAEKT SRLKYVPKQK 660 S

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MLLQKPPVIL KNVCQVSKSA NLPGWPLLSP SKIQLQKCDK CSREFCSSIN YRRHRRVHRR  60
SLNVDKDSQK NRDFLGTFWD KLSEDEAKEL VSLRNVTIEE VTGSSVTKAL STSFRRAGVL  120
SSLPQGYIKA GLTLLEIVQA SPSMLPMSSQ ELFSVLDEAS EKTFLCAGTA LSLQKYVFDG  180
EVVKKALEIK NIVACTSFLI EIELVKAWLV DKDAEALRCQ KLLVDEEEAA HRRKAELLER  240
KRLKKLRQKE QKQNEASNGE KNDFKGPSPD SPPDFMGSTE ASSSTRDSSE DCTSEASHIQ  300
EHQVDFAESS ATEDDGNAGK NISHNAQNDH QNLSDRGKSP NLASRADDPG RDVVHQTRGT  360
GHMQSNHLRQ VQSRLTQNNP SGFQAGQVST ARPLVNMRQN NSRDSKVINR PNGNKVWTIK  420
SRPDNDEDGK YGEEADRELT NQPSVSDRSE VQVLIGSINV SLGDDELQHH CTIMEPQRQE  480
KLVKPDSSLS SLGKTPVKLW KPVSRHGNGN LVQNDHDDVK QGVPAAKDAE RLLPGGSCLA  540
FEGLVSDFER CRGSIMFSTE AAKAFLVQRW KEAIAGDEVL IISSPDTEAS GNPNHIEGNF  600
VNIPSQSSDF HGRHILGRVE NRLAVAGVAA IDPALNGSLH FKFRPKAEKT SRLKYVPKQK  660
S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	246	ERKRLKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	2e-74	C2H2 family protein