PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020680218.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 787aa MW: 86848.1 Da PI: 7.4623

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020680218.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00096	163	184	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rH r+H XP_020680218.1 163 KCDKCSREFCSSINYRRHRRVH 184 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence
MSVRKIRACS TMSGMNPEQD NIDSFIRQAI GKEPFLSLSR AGDSPVQLIQ LLHAFDQQGT 60 DKVPKSSKGD SCNELKENSD NIFYGVDSFS SEPNGIKDHV HSLKGWESNT KGSKCTPAQM 120 PSRKIPEAVV AFAHAAAKAT SDPEKSNLPG WPLLSPSKIQ LQKCDKCSRE FCSSINYRRH 180 RRVHRRSLNV DKDSQKNRDF LGTFWDKLSE DEAKELVSLR NVTIEEVTGS SVTKALSTSF 240 RRAGVLSSLP QGYIKAGLTL LEIVQASPSM LPMSSQELFS VLDEASEKTF LCAGTALSLQ 300 KYVFDGEVVK KALEIKNIVA CTSFLIEIEL VKAWLVDKDA EALRCQKLLV DEEEAAHRRK 360 AELLERKRLK KLRQKEQKQN EASNGEKNDF KGPSPDSPPD FMGSTEASSS TRDSSEDCTS 420 EASHIQEHQV DFAESSATED DGNAGKNISH NAQNDHQNLS DRGKSPNLAS RADDPGRDVV 480 HQTRGTGHMQ SNHLRQVQSR LTQNNPSGFQ AGQVSTARPL VNMRQNNSRD SKVINRPNGN 540 KVWTIKSRPD NDEDGKYGEE ADRELTNQPS VSDRSEVQVL IGSINVSLGD DELQHHCTIM 600 EPQRQEKLVK PDSSLSSLGK TPVKLWKPVS RHGNGNLVQN DHDDVKQGVP AAKDAERLLP 660 GGSCLAFEGL VSDFERCRGS IMFSTEAAKA FLVQRWKEAI AGDEVLIISS PDTEASGNPN 720 HIEGNFVNIP SQSSDFHGRH ILGRVENRLA VAGVAAIDPA LNGSLHFKFR PKAEKTSRLK 780 YVPKQKS

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence

MSVRKIRACS TMSGMNPEQD NIDSFIRQAI GKEPFLSLSR AGDSPVQLIQ LLHAFDQQGT  60
DKVPKSSKGD SCNELKENSD NIFYGVDSFS SEPNGIKDHV HSLKGWESNT KGSKCTPAQM  120
PSRKIPEAVV AFAHAAAKAT SDPEKSNLPG WPLLSPSKIQ LQKCDKCSRE FCSSINYRRH  180
RRVHRRSLNV DKDSQKNRDF LGTFWDKLSE DEAKELVSLR NVTIEEVTGS SVTKALSTSF  240
RRAGVLSSLP QGYIKAGLTL LEIVQASPSM LPMSSQELFS VLDEASEKTF LCAGTALSLQ  300
KYVFDGEVVK KALEIKNIVA CTSFLIEIEL VKAWLVDKDA EALRCQKLLV DEEEAAHRRK  360
AELLERKRLK KLRQKEQKQN EASNGEKNDF KGPSPDSPPD FMGSTEASSS TRDSSEDCTS  420
EASHIQEHQV DFAESSATED DGNAGKNISH NAQNDHQNLS DRGKSPNLAS RADDPGRDVV  480
HQTRGTGHMQ SNHLRQVQSR LTQNNPSGFQ AGQVSTARPL VNMRQNNSRD SKVINRPNGN  540
KVWTIKSRPD NDEDGKYGEE ADRELTNQPS VSDRSEVQVL IGSINVSLGD DELQHHCTIM  600
EPQRQEKLVK PDSSLSSLGK TPVKLWKPVS RHGNGNLVQN DHDDVKQGVP AAKDAERLLP  660
GGSCLAFEGL VSDFERCRGS IMFSTEAAKA FLVQRWKEAI AGDEVLIISS PDTEASGNPN  720
HIEGNFVNIP SQSSDFHGRH ILGRVENRLA VAGVAAIDPA LNGSLHFKFR PKAEKTSRLK  780
YVPKQKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	365	372	ERKRLKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	2e-73	C2H2 family protein